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#!/usr/bin/make -f
export PYBUILD_NAME=MACS3
export DEB_BUILD_MAINT_OPTIONS=hardening=+all
#export DEB_CFLAGS_MAINT_APPEND+=-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3
#export DEB_CXXFLAGS_MAINT_APPEND+=-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3
# not necessary, upstream does this already in setup.py
include /usr/share/dpkg/default.mk
subcommands=callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff \
filterdup predictd pileup randsample refinepeak
tagline=\- Model\-based Analysis for ChIP\-Sequencing
# DH_VERBOSE := 1
%:
dh $@ --buildsystem=pybuild
execute_before_dh_python3:
dh_numpy3
override_dh_auto_build:
for pyx in $$(find MACS3/ -name "*.pyx"); do \
rm -f $${pyx%%.pyx}.{h,c}; touch $${pyx}; done
dh_auto_build
PYTHONPATH=./.pybuild/cpython3_$$(py3versions -v -d)_MACS3/build/ help2man \
--no-discard-stderr --no-info \
--name "macs3 ${tagline}" "python3 bin/macs3" > debian/macs3.1
for subcommand in ${subcommands}; do printf \
"[NAME]\nmac3_$${subcommand} ${tagline}\n" \
> debian/macs3_$${subcommand}-man-include; done
for subcommand in ${subcommands}; do \
PYTHONPATH=./.pybuild/cpython3_$$(py3versions -v -d)_MACS3/build/ help2man \
--no-discard-stderr --no-info --version-string="$(DEB_VERSION_UPSTREAM)" \
--include debian/macs3_$${subcommand}-man-include \
"python3 bin/macs3 $${subcommand}" > \
debian/macs3_$${subcommand}.1; done
override_dh_auto_test:
ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
dh_auto_test
ifeq (,$(filter $(DEB_HOST_ARCH),arm64 ppc64el s390x))
cd test && for PY3VER in $(shell py3versions -vs); do \
export PATH=$(CURDIR)/.pybuild/cpython3_$${PY3VER}_MACS3/scripts:$$PATH \
&& export PYTHONPATH=$(CURDIR)/.pybuild/cpython3_$${PY3VER}_MACS3/build \
&& ./cmdlinetest macs$(DEB_VERSION)-$${PY3VER} ; done
endif
endif
override_dh_auto_clean:
rm -Rf test/macs$(DEB_VERSION)* test/speedtest*
rm -f debian/*.1 debian/*-man-include
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