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#!/usr/bin/env python
# Time-stamp: <2019-12-12 14:42:28 taoliu>
import unittest
from MACS3.IO.Parser import *
class Test_auto_guess ( unittest.TestCase ):
def setUp ( self ):
self.bedfile = "test/tiny.bed.gz"
self.bedpefile = "test/tiny.bedpe.gz"
self.samfile = "test/tiny.sam.gz"
self.bamfile = "test/tiny.bam"
def test_guess_parser_bed ( self ):
p = guess_parser( self.bedfile )
self.assertTrue( p.is_gzipped() )
self.assertTrue( isinstance(p, BEDParser) )
def test_guess_parser_sam ( self ):
p = guess_parser( self.samfile )
self.assertTrue( p.is_gzipped() )
self.assertTrue( isinstance(p, SAMParser) )
def test_guess_parser_bam ( self ):
p = guess_parser( self.bamfile )
self.assertTrue( p.is_gzipped() )
self.assertTrue( isinstance(p, BAMParser) )
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