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MacSyFinder
===========
[]
(https://gitlab.pasteur.fr/gem/MacSyFinder/commits/master)
[]
(https://gitlab.pasteur.fr/gem/MacSyFinder/commits/master)
[![Documentation]()https://img.shields.io/badge/style-plastic-blue.svg?style=plastic
MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
Citation
--------
Abby SS, Néron B, Ménager H, Touchon M, Rocha EPC (2014). MacSyFinder: A Program to Mine Genomes for Molecular Systems with an Application to CRISPR-Cas Systems. PLoS ONE 9(10): e110726. doi:10.1371/journal.pone.0110726
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0110726
Download distribution
---------------------
[  ](https://bintray.com/gem-pasteur/MacSyFinder/macsyfinder/_latestVersion)
Installation from distribution
------------------------------
1. Uncompress and untar the package:
```bash
tar -xzf macsyfinder-x.x.tar.gz
```
2. Go to the MacSyFinder directory
```bash
cd macsyfinder-x.x
```
3. Build
```bash
python setup.py build
```
4. Test
```bash
python setup.py test -vv
```
5. Install
```bash
sudo python setup.py install
```
To see all installation options "python setup.py --help"
See the INSTALL file for more details.
Installation from repository
----------------------------
Please be careful, MacSyView has its own repository: https://github.com/gem-pasteur/macsyview
Unit tests with Travis-CI
-------------------------
[](https://travis-ci.org/gem-pasteur/macsyfinder)
Unit tests with gitlab-ci
-------------------------
[](https://gitlab.pasteur.fr/gem/MacSyFinder/commits/master)
[](http://gem.pages.pasteur.fr/MacSyFinder/htmlcov/index.html)
Documentation
-------------
You will find complete documentation for setting up your project.
for the development version on gitlab pages
[![Doc] (https://img.shields.io/badge/docs-passed-brightgreen.svg)](http://gem.pages.pasteur.fr/MacSyFinder/)
for public version on readthedocs
[![Doc] (https://readthedocs.org/projects/macsyfinder/badge/?version=latest)](http://macsyfinder.readthedocs.org/en/latest/#)
Note
----
The `setsid` binary in *utils* directory is used only for functional tests on macosx.
The binary has been build using the [setsid-macosx](https://github.com/tzvetkoff/setsid-macosx) project.
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