File: rejected_candidates.tsv

package info (click to toggle)
macsyfinder 2.1.4-1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 134,860 kB
  • sloc: python: 20,583; xml: 953; sh: 37; makefile: 16
file content (11 lines) | stat: -rw-r--r-- 1,202 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
# macsyfinder 20220805.dev
# models : functional-0.0b2
# /home/bneron/Projects/GEM/MacSyFinder/MacSyFinder/py39/bin/macsyfinder --db-type ordered_replicon --replicon-topology linear --models-dir tests/data/models/ -m functional T12SS-simple-exch --relative-path --sequence-db tests/data/base/test_3.fasta
# Rejected candidates found:
candidate_id	replicon	model_fqn	cluster_id	hit_id	hit_pos	gene_name	function	reasons
test_3_T12SS-simple-exch_1	test_3	functional/T12SS-simple-exch	c3	VICH001.B.00001.C001_01397	2	T1SS_abc	T1SS_abc	The quorum of mandatory genes required (2) is not reached: 1/The quorum of genes required (3) is not reached: 2
test_3_T12SS-simple-exch_1	test_3	functional/T12SS-simple-exch	c3	VICH001.B.00001.C001_01398	3	T1SS_mfp	T1SS_mfp	The quorum of mandatory genes required (2) is not reached: 1/The quorum of genes required (3) is not reached: 2

test_3_T12SS-simple-exch_2	test_3	functional/T12SS-simple-exch	c4	VICH001.B.00001.C001_01399	37	T1SS_abc	T1SS_abc	The quorum of genes required (3) is not reached: 2
test_3_T12SS-simple-exch_2	test_3	functional/T12SS-simple-exch	c4	VICH001.B.00001.C001_01400	38	T2SS_gspD	T1SS_omf	The quorum of genes required (3) is not reached: 2