File: all_systems.tsv

package info (click to toggle)
macsyfinder 2.1.4-1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 134,860 kB
  • sloc: python: 20,583; xml: 953; sh: 37; makefile: 16
file content (14 lines) | stat: -rw-r--r-- 1,876 bytes parent folder | download | duplicates (2) 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
 
# macsyfinder 20220317.dev
# models : functional-0.0b2
# /home/bneron/Projects/GEM/MacSyFinder/MacSyFinder/py39/bin/macsyfinder --sequence-db tests/data/base/test_14.fasta --db-type ordered_replicon --models-dir tests/data/models/ --models functional C_multi_model D_multi_model --replicon-topology circular -w 4 -o functional_test_ordered_multi_model --relative-path
# Systems found:
replicon	hit_id	gene_name	hit_pos	model_fqn	sys_id	sys_loci	locus_num	sys_wholeness	sys_score	sys_occ	hit_gene_ref	hit_status	hit_seq_len	hit_i_eval	hit_score	hit_profile_cov	hit_seq_cov	hit_begin_match	hit_end_match	counterpart	used_in
test_14	VICH001.B.00001.C001_01506	T1SS_omf	8	functional/C_multi_model	test_14_C_multi_model_1	1	1	1.000	2.500	1	T1SS_omf	mandatory	419	8.6e-35	111.500	0.998	0.912	25	406		
test_14	VICH001.B.00001.C001_01398	T1SS_mfp	9	functional/C_multi_model	test_14_C_multi_model_1	1	1	1.000	2.500	1	T1SS_mfp	accessory	467	2.1e-72	235.600	1.000	0.797	85	456		
test_14	VICH001.B.00001.C001_01399	T1SS_abc	10	functional/C_multi_model	test_14_C_multi_model_1	1	1	1.000	2.500	1	T1SS_abc	accessory	720	1.9e-158	519.700	1.000	0.699	167	669		
test_14	VICH001.B.00001.C001_01400	T2SS_gspD	11	functional/C_multi_model	test_14_C_multi_model_1	1	1	1.000	2.500	1	T2SS_gspD	accessory	559	2e-47	153.400	0.559	0.658	168	535		test_14_D_multi_model_2

test_14	VICH001.B.00001.C001_01400	T2SS_gspD	11	functional/D_multi_model	test_14_D_multi_model_2	1	1	1.000	2.000	1	T2SS_gspD	accessory	559	2e-47	153.400	0.559	0.658	168	535		test_14_C_multi_model_1
test_14	GCF_000005845_000980	T4P_pilB	12	functional/D_multi_model	test_14_D_multi_model_2	1	1	1.000	2.000	1	T4P_pilB	mandatory	461	1.3e-154	506.100	0.948	0.850	62	453		
test_14	GCF_000005845_025680	T4P_pilW	13	functional/D_multi_model	test_14_D_multi_model_2	1	1	1.000	2.000	1	T4P_pilW	accessory	187	4.9e-11	34.500	0.625	0.401	6	80