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[base]
db_type = ordered_replicon
idx = False
replicon_topology = linear
sequence_db = tests/data/base/test_12.fasta
[models_opt]
[models]
models = functional T12SS-multisystem
[hmmer]
coverage_profile = 0.5
e_value_search = 0.1
no_cut_ga = False
i_evalue_sel = 0.001
hmmer = hmmsearch
[score_opt]
mandatory_weight = 1.0
accessory_weight = 0.5
neutral_weight = 0.0
exchangeable_weight = 0.8
itself_weight = 1.0
redundancy_penalty = 1.5
out_of_cluster_weight = 0.7
[directories]
models_dir = tests/data/models/
system_models_dir = /home/bneron/Projects/GEM/MacSyFinder/MacSyFinder/src/MacSyFinder/data/models, /home/bneron/.macsyfinder/data
out_dir = functional_test_multi_system_out_system
profile_suffix = .hmm
res_search_suffix = .search_hmm.out
res_extract_suffix = .res_hmm_extract
[general]
log_file = macsyfinder.log
log_level = 20
relative_path = True
verbosity = 0
quiet = 0
mute = False
worker = 15
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