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<?xml version='1.0' encoding='UTF-8'?>
<!--
Authors: Jim Doe, John Doe
Copyright: 2022 Pasteur
See COPYRIGHT file for details.
init_pack is a package of models for macsyfinder
(https://github.com/gem-pasteur/macsyfinder)
init_pack description in one line of this package
This work is licensed under the Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/4.0/
or send a letter to Creative Commons, PO Box 1866, Mountain View, CA 94042, USA.
-->
<model inter_gene_max_space="5" min_mandatory_genes_required="2" min_genes_required="3" vers="2.0">
<!--GENE_1 is a mandatory gene. GENE_1.hmm must exist in profiles directory-->
<gene name="GENE_1" presence="mandatory" />
<!--GENE_2 is accessory and can be exchanged with GENE_3 which play a similar role in model.
Both GENE_2.hmm and GENE_3.hmm must exist in profiles_directory-->
<gene name="GENE_2" presence="accessory">
<exchangeables>
<gene name="GENE_3" />
</exchangeables>
</gene>
<!--GENE_4 can be anywhere in the genome and not clusterized with some other model genes-->
<gene name="GENE_4" presence="accessory" loner="true" />
<!--GENE_5 can be shared by several systems instance from different models.-->
<gene name="GENE_5" presence="accessory" multi_model="true" />
<!--GENE_6 have specific clusterisation rule-->
<gene name="GENE_6" presence="accessory" inter_gene_max_space="10" />
<!--
For exhaustive documentation about grammar visit
https://macsyfinder.readthedocs.io/en/latest/modeler_guide/package.html
-->
</model>
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