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// -------------------------------------------------------------------
// MAdLib - Copyright (C) 2008-2009 Universite catholique de Louvain
//
// See the Copyright.txt and License.txt files for license information.
// You should have received a copy of these files along with MAdLib.
// If not, see <http://www.madlib.be/license/>
//
// Please report all bugs and problems to <contrib@madlib.be>
//
// Authors: Josue Barboza
// -------------------------------------------------------------------
#ifdef PARALLEL
#include "mpi.h"
#include "autopack.h"
#include "MeshDataBaseParallelInterface.h"
#include "MeshDataBaseLoadBalancing.h"
#include "MeshDataBase.h"
#include "assert.h"
#include <iostream>
namespace MAd {
typedef std::set< int > SetOfDestination_type;
// -------------------------------------------------------------------
// -------------------------------------------------------------------
struct coor_comm2
{
double X,Y,Z;
int tag,dim;
int id;
};
// -------------------------------------------------------------------
void MarkVertex( pVertex pv, pMeshDataId tagD ,int d_proc )
{
void *temp_ptr;
SetOfDestination_type *recup = NULL;
int is = EN_getDataPtr((pEntity) pv, tagD, &temp_ptr);
if( !is ){
recup = new SetOfDestination_type;
EN_attachDataPtr((pEntity) pv , tagD, recup);
}else
{
recup = reinterpret_cast< SetOfDestination_type *> (temp_ptr);
}
recup->insert( d_proc );
}
// -------------------------------------------------------------------
void MarkEdge( pEdge pe, pMeshDataId tagD ,int d_proc )
{
void *temp_ptr;
SetOfDestination_type *recup = NULL;
int is = EN_getDataPtr((pEntity) pe, tagD, &temp_ptr);
if( !is ){
recup = new SetOfDestination_type;
EN_attachDataPtr((pEntity) pe, tagD, recup);
}else {
recup = reinterpret_cast<SetOfDestination_type *> (temp_ptr);
}
recup->insert(d_proc);
pVertex nod[2];
nod[0] = E_vertex(pe,0);
nod[1] = E_vertex(pe,1);
MarkVertex( nod[0], tagD, d_proc);
MarkVertex( nod[1], tagD, d_proc);
}
// -------------------------------------------------------------------
void MarkFace( pFace pf, pMeshDataId tagD ,int d_proc )
{
void *temp_ptr;
SetOfDestination_type *recup = NULL;
int is = EN_getDataPtr((pEntity) pf, tagD, &temp_ptr);
if( !is ){
recup = new SetOfDestination_type;
EN_attachDataPtr((pEntity) pf, tagD, recup);
}else {
recup = reinterpret_cast<SetOfDestination_type *> (temp_ptr);
}
recup->insert(d_proc);
for( int i = 0; i<(pf->getNbEdges()); i++) {
MarkEdge( F_edge( pf,i ), tagD, d_proc );
}
}
// -------------------------------------------------------------------
void MarkRegion( pRegion pr, pMeshDataId tagD ,int d_proc )
{
void *temp_ptr;
SetOfDestination_type *recup = NULL;
int is = EN_getDataPtr((pEntity) pr, tagD, &temp_ptr);
if( !is ){
recup = new SetOfDestination_type;
EN_attachDataPtr((pEntity) pr, tagD, recup);
}else {
recup = reinterpret_cast<SetOfDestination_type *> (temp_ptr);
}
recup->insert(d_proc);
for( int i = 0; i<(pr->getNbFace()); i++) {
MarkFace( R_face( pr,i ), tagD, d_proc );
}
}
// -------------------------------------------------------------------
void MarkEltSubEntities( pMesh mesh, pMeshDataId tagElt )
{
pMeshDataId tagDest = MD_lookupMeshDataId("tagDestinations");
MD_deleteMeshDataId(tagDest);
int dim = (mesh->tets.empty()) ? 2 : 3;
if( dim == 2 ){
FIter fit = M_faceIter(mesh);
pFace pface;
while ((pface = FIter_next(fit))) {
int dest;
int migre = EN_getDataInt((pEntity) pface, tagElt, &dest);
if(!migre) continue;
MarkFace( pface, tagDest ,dest-1 );
}
FIter_delete(fit);
}
else {
if(dim!=3) throw;
RIter rit = M_regionIter(mesh);
pRegion pr;
while ((pr = RIter_next(rit))) {
int dest;
int migre = EN_getDataInt((pEntity) pr, tagElt, &dest);
if(!migre) continue;
MarkRegion( pr, tagDest ,dest-1 );
}
RIter_delete(rit);
}
}
// -------------------------------------------------------------------
void * VertexAndDataPackaging( pVertex pv, int d, MDB_DataExchanger &de)
{
int sizebuf;
void *msg = de.sendData ((pEntity) pv, d, sizebuf );
void *buf = AP_alloc(d,de.tag(),sizeof(coor_comm2)+sizebuf);
char *cast = reinterpret_cast< char *> (buf);
coor_comm2 castbuf;
castbuf.X = P_x(pv);
castbuf.Y = P_y(pv);
castbuf.Z = P_z(pv);
pGEntity pg = EN_whatIn(pv);
castbuf.tag = GEN_tag(pg);
castbuf.dim = GEN_type(pg);
castbuf.id = EN_id( pv );
memcpy(&cast[0],&castbuf,sizeof(coor_comm2));
memcpy(&cast[sizeof(coor_comm2)],msg,sizebuf);
free(msg);
return buf;
}
// -------------------------------------------------------------------
void VertexAndDataUnpackaging( pMesh mesh, void *msg, int from,
MDB_DataExchanger &de)
{
char * castbuf = reinterpret_cast< char *> ( msg );
coor_comm2 * coorcom = reinterpret_cast< coor_comm2 *> (castbuf);
pGEntity pg = NULL;
int dim = coorcom->dim;
int tag = coorcom->tag;
if(dim == 0) {
pg = (pGEntity) GM_vertexByTag(mesh->model,tag);
} else if(dim==1) {
pg = (pGEntity) GM_edgeByTag(mesh->model,tag);
} else if(dim==2) {
pg = (pGEntity) GM_faceByTag(mesh->model,tag);
} else if(dim==3) {
pg = (pGEntity) GM_regionByTag(mesh->model,tag);
}
pVertex pnew = mesh->find_point(coorcom->id);
if( !pnew ){
// double X = coorcom->X;
// double Y = coorcom->Y;
// double Z = coorcom->Z;
// pnew = M_createVP(mesh,X,Y,Z,coorcom->id,pg);
double XYZ[3] = {coorcom->X,coorcom->Y,coorcom->Z};
pnew = M_createV2(mesh,XYZ,coorcom->id,pg);
}
de.receiveData (pnew,from, &castbuf[sizeof(coor_comm2)]);
}
// -------------------------------------------------------------------
void MigrateVerticesAndData( pMesh mesh, pMeshDataId tagDest,
MDB_DataExchanger &de)
{
int nproc,myrank;
MPI_Comm_size(MPI_COMM_WORLD, &nproc);
MPI_Comm_rank(MPI_COMM_WORLD, &myrank);
int *sendcounts = new int[nproc];
for( int i=0; i<nproc; i++){
sendcounts[i]= 0;
}
VIter vit = M_vertexIter(mesh);
pVertex pv;
while ((pv = VIter_next(vit))) {
void *temp_ptr;
int migre = EN_getDataPtr((pEntity) pv, tagDest, &temp_ptr);
if(!migre) continue;
const SetOfDestination_type *recup =
reinterpret_cast< const SetOfDestination_type* > (temp_ptr);
assert( (recup->size())>0 );
SetOfDestination_type::const_iterator itd = recup->begin();
for(; itd!=recup->end(); itd ++) {
int dest = *itd;
assert(dest!=myrank);
void *buf = VertexAndDataPackaging( pv, dest, de );
AP_send(buf);
sendcounts[dest]++;
}
}
VIter_delete(vit);
AP_check_sends(AP_NOFLAGS);
AP_reduce_nsends(sendcounts);
/*receive Vertices and data*/
int message=0;
int count;
while (!AP_recv_count(&count) || message<count) {
void *msg;
int from;
int tag;
int size;
int recv;
recv = AP_recv(MPI_ANY_SOURCE, de.tag(), AP_BLOCKING|AP_DROPOUT,
&msg, &size, &from, &tag);
if(recv) {
message++;
VertexAndDataUnpackaging( mesh, msg, from, de);
AP_free(msg);
}
}
AP_check_sends(AP_WAITALL);
MPI_Barrier(MPI_COMM_WORLD);
delete [] sendcounts;
}
// -------------------------------------------------------------------
void * EdgeAndDataPackaging( pEdge pe, int d, MDB_DataExchanger &de)
{
int sizebuf;
void *msg = de.sendData ((pEntity) pe, d, sizebuf );
int castbuf[4];
int sizeOfcastbuf = sizeof(int) *4;
void *buf = AP_alloc(d,de.tag(), sizeOfcastbuf +sizebuf );
char *cast = reinterpret_cast< char *> (buf);
pGEntity pg = EN_whatIn( pe );
castbuf[0] = GEN_tag( pg );
castbuf[1] = GEN_type( pg );
castbuf[2] = EN_id( E_vertex( pe, 0 ) );
castbuf[3] = EN_id( E_vertex( pe, 1 ) );
memcpy( &cast[0], castbuf, sizeOfcastbuf );
memcpy( &cast[sizeOfcastbuf],msg,sizebuf);
free(msg);
return buf;
}
// -------------------------------------------------------------------
void EdgeAndDataUnpackaging( pMesh mesh, void *msg, int from,
MDB_DataExchanger &de)
{
char* castbuf = reinterpret_cast<char*> (msg);
int * Edge_comm = reinterpret_cast<int*> (castbuf);
int tag = *(Edge_comm++);
int dim = *(Edge_comm++);
pGEntity pg = NULL;
if(dim==2) {
pg = (pGEntity) GM_faceByTag(mesh->model,tag);
} else if(dim==3) {
pg = (pGEntity) GM_regionByTag(mesh->model,tag);
}
pVertex pv[2];
pv[0]= mesh->find_point( *(Edge_comm++) );
pv[1]= mesh->find_point( *(Edge_comm++) );
pEdge pe = E_exist(pv[0],pv[1]);
if( !pe ) {
pe = M_createE(mesh,pv[0],pv[1],pg);
}
assert(pe);
de.receiveData (pe,from, &castbuf[sizeof(int)*4]);
}
// -------------------------------------------------------------------
// -------------------------------------------------------------------
void MigrateEdgesAndData(pMesh mesh, pMeshDataId tagDest,
MDB_DataExchanger &de)
{
int nproc,myrank;
MPI_Comm_size(MPI_COMM_WORLD, &nproc);
MPI_Comm_rank(MPI_COMM_WORLD, &myrank);
int *sendcounts = new int[nproc];
for( int i=0; i<nproc; i++){
sendcounts[i]= 0;
}
EIter eit = M_edgeIter(mesh);
pEdge pe;
while ((pe = EIter_next(eit))) {
void *temp_ptr;
int migre = EN_getDataPtr((pEntity) pe, tagDest, &temp_ptr);
if(!migre) continue;
const SetOfDestination_type *recup =
reinterpret_cast< const SetOfDestination_type* > (temp_ptr);
assert( (recup->size())>0 );
SetOfDestination_type::const_iterator itd = recup->begin();
for(; itd!=recup->end(); itd ++) {
int dest = *itd;
assert(dest!=myrank);
void *buf = EdgeAndDataPackaging( pe, dest, de );
AP_send(buf);
sendcounts[dest]++;
}
}
EIter_delete(eit);
AP_check_sends(AP_NOFLAGS);
AP_reduce_nsends(sendcounts);
/*receive Edges and data*/
int message=0;
int count;
while (!AP_recv_count(&count) || message<count) {
void *msg;
int from;
int tag;
int size;
int recv;
recv = AP_recv(MPI_ANY_SOURCE, de.tag(), AP_BLOCKING|AP_DROPOUT,
&msg, &size, &from, &tag);
if(recv) {
message++;
EdgeAndDataUnpackaging( mesh, msg, from, de);
AP_free(msg);
}
}
AP_check_sends(AP_WAITALL);
MPI_Barrier(MPI_COMM_WORLD);
delete [] sendcounts;
}
// -------------------------------------------------------------------
// -------------------------------------------------------------------
void * FaceAndDataPackaging( pFace pf, int d, MDB_DataExchanger &de )
{
int sizebuf;
void *msg = de.sendData ((pEntity) pf, d, sizebuf );
int nV = F_numVertices( pf );
int nComm = nV+3;
int *castbuf = new int[nComm];
int sizeOfcastbuf = sizeof(int) * nComm;
void *buf = AP_alloc(d,de.tag(), sizeOfcastbuf +sizebuf );
char *cast = reinterpret_cast< char *> (buf);
pGEntity pg = EN_whatIn( pf );
castbuf[0] = GEN_tag( pg );
castbuf[1] = GEN_type( pg );
castbuf[2] = nV;
for( int i = 0; i< nV; i++) {
int vId = EN_id( F_vertex( pf, i ) );
castbuf[3+i]= vId ;
}
memcpy( &cast[0], castbuf, sizeOfcastbuf );
memcpy( &cast[sizeOfcastbuf],msg,sizebuf );
delete [] castbuf;
free(msg);
return buf;
}
// -------------------------------------------------------------------
void FaceAndDataUnpackaging( pMesh mesh, void *msg, int from,
MDB_DataExchanger &de )
{
/*! \TODO: only triangle is taken into account. Should be extended to other*/
char* castbuf = reinterpret_cast< char* >( msg );
int* pf_com = reinterpret_cast< int* > (castbuf);
int tag = pf_com[0];
int dim = pf_com[1];
int nbV = pf_com[2];
if( nbV != 3 ) {
std::cout<<"Unpackaging Face that is diff. form triangle is not implemented: "
<<nbV<<std::endl;
assert(0);
}
pGEntity pg = NULL;
if(dim==2) {
pg = (pGEntity) GM_faceByTag(mesh->model,tag);
} else if(dim==3) {
pg = (pGEntity) GM_regionByTag(mesh->model,tag);
}
pVertex *ListOfpVertex = new pVertex[nbV];
for( int i = 0; i< nbV; i++ ) {
ListOfpVertex[i] = mesh->find_point( pf_com[3+i] );
}
pEdge pe[3];
pe[0] = E_exist(ListOfpVertex[0],ListOfpVertex[1]);
assert(pe[0]);
pe[1] = E_exist(ListOfpVertex[1],ListOfpVertex[2]);
assert(pe[1]);
pe[2] = E_exist(ListOfpVertex[0],ListOfpVertex[2]);
assert(pe[2]);
// pFace pface = F_exist(2,pe[0],pe[1],pe[2],0);
pFace pface = F_exist(pe[0],pe[1],pe[2],0);
if( !pface ) {
pface = M_createF(mesh,3,pe,pg);
}
assert(pface);
de.receiveData (pface,from, &castbuf[sizeof(int)*(nbV+3)]);
delete [] ListOfpVertex ;
}
// -------------------------------------------------------------------
// -------------------------------------------------------------------
void MigrateFacesAndData( pMesh mesh, pMeshDataId tagDest,
MDB_DataExchanger &de)
{
int nproc,myrank;
MPI_Comm_size(MPI_COMM_WORLD, &nproc);
MPI_Comm_rank(MPI_COMM_WORLD, &myrank);
int *sendcounts = new int[nproc];
for( int i=0; i<nproc; i++){
sendcounts[i]= 0;
}
FIter fit = M_faceIter(mesh);
pFace pf;
while ((pf = FIter_next(fit))) {
void *temp_ptr;
int migre = EN_getDataPtr((pEntity) pf, tagDest, &temp_ptr);
if(!migre) continue;
const SetOfDestination_type *recup =
reinterpret_cast< const SetOfDestination_type* > (temp_ptr);
assert( (recup->size())>0 );
SetOfDestination_type::const_iterator itd = recup->begin();
for(; itd!=recup->end(); itd ++) {
int dest = *itd;
assert(dest!=myrank);
void *buf = FaceAndDataPackaging( pf, dest, de );
AP_send(buf);
sendcounts[dest]++;
}
}
FIter_delete(fit);
AP_check_sends(AP_NOFLAGS);
AP_reduce_nsends(sendcounts);
/*receive Faces and data*/
int message=0;
int count;
while (!AP_recv_count(&count) || message<count) {
void *msg;
int from;
int tag;
int size;
int recv;
recv = AP_recv(MPI_ANY_SOURCE, de.tag(), AP_BLOCKING|AP_DROPOUT,
&msg, &size, &from, &tag);
if(recv) {
message++;
FaceAndDataUnpackaging( mesh, msg, from, de);
AP_free(msg);
}
}
AP_check_sends(AP_WAITALL);
MPI_Barrier(MPI_COMM_WORLD);
delete [] sendcounts;
}
// -------------------------------------------------------------------
// -------------------------------------------------------------------
void * RegionAndDataPackaging( pRegion pr, int d, MDB_DataExchanger &de)
{
int sizebuf;
void *msg = de.sendData ((pEntity) pr, d, sizebuf );
int nV = R_numVertices( pr );
int nComm = nV+3;
int *castbuf = new int[nComm];
int sizeOfcastbuf = sizeof(int) * nComm;
void *buf = AP_alloc(d,de.tag(), sizeOfcastbuf +sizebuf );
char *cast = reinterpret_cast<char *> (buf);
pGEntity pg = EN_whatIn( pr );
castbuf[0] = GEN_tag( pg );
castbuf[1] = GEN_type( pg );
castbuf[2] = nV;
for( int i = 0; i< nV; i++) {
int vId = EN_id( R_vertex( pr, i ) );
castbuf[3+i]= vId ;
}
memcpy( &cast[0], castbuf, sizeOfcastbuf );
memcpy( &cast[sizeOfcastbuf],msg,sizebuf);
delete [] castbuf;
free(msg);
return buf;
}
// -------------------------------------------------------------------
void RegionAndDataUnpackaging( pMesh mesh, void *msg, int from,
MDB_DataExchanger &de)
{
/*! \TODO: only tethra is taken into account. Should be extended to other*/
char* castbuf = reinterpret_cast<char*> (msg);
int * Region_comm = reinterpret_cast<int*> (castbuf);
int tag = *(Region_comm++);
int dim = *(Region_comm++);
int nbVertices = *(Region_comm++);
if( nbVertices != 4 ) {
std::cout<<"Unpackaging Region that is diff. form tethra is not implemented"
<<nbVertices<<std::endl;
assert(0);
}
pGEntity pg = NULL;
if(dim==2) {
pg = (pGEntity) GM_faceByTag(mesh->model,tag);
} else if(dim==3) {
pg = (pGEntity) GM_regionByTag(mesh->model,tag);
}
pVertex *ListOfpVertex = new pVertex[nbVertices];
for( int i = 0; i< nbVertices; i++ ) {
ListOfpVertex[i] = mesh->find_point( *(Region_comm++) );
}
pFace pface[4];
// pface[0] = F_exist(2,ListOfpVertex[0],ListOfpVertex[1],ListOfpVertex[2],0);
// assert(pface[0]);
// pface[1] = F_exist(2,ListOfpVertex[0],ListOfpVertex[1],ListOfpVertex[3],0);
// assert(pface[1]);
// pface[2] = F_exist(2,ListOfpVertex[1],ListOfpVertex[2],ListOfpVertex[3],0);
// assert(pface[2]);
// pface[3] = F_exist(2,ListOfpVertex[0],ListOfpVertex[2],ListOfpVertex[3],0);
// assert(pface[3]);
pface[0] = F_exist(ListOfpVertex[0],ListOfpVertex[1],ListOfpVertex[2],0);
assert(pface[0]);
pface[1] = F_exist(ListOfpVertex[0],ListOfpVertex[1],ListOfpVertex[3],0);
assert(pface[1]);
pface[2] = F_exist(ListOfpVertex[1],ListOfpVertex[2],ListOfpVertex[3],0);
assert(pface[2]);
pface[3] = F_exist(ListOfpVertex[0],ListOfpVertex[2],ListOfpVertex[3],0);
assert(pface[3]);
pRegion pr = M_createR(mesh,4,pface,pg);
assert(pr);
de.receiveData (pr,from, &castbuf[sizeof(int)*(nbVertices+3)]);
delete [] ListOfpVertex ;
}
// -------------------------------------------------------------------
// -------------------------------------------------------------------
void MigrateRegionsAndData( pMesh mesh, pMeshDataId tagDest,
MDB_DataExchanger &de)
{
int nproc,myrank;
MPI_Comm_size(MPI_COMM_WORLD, &nproc);
MPI_Comm_rank(MPI_COMM_WORLD, &myrank);
int *sendcounts = new int[nproc];
for( int i=0; i<nproc; i++){
sendcounts[i]= 0;
}
RIter rit = M_regionIter(mesh);
pRegion pr;
while ((pr = RIter_next(rit))) {
void *temp_ptr;
int migre = EN_getDataPtr((pEntity) pr, tagDest, &temp_ptr);
if(!migre) continue;
const SetOfDestination_type *recup =
reinterpret_cast< const SetOfDestination_type*> (temp_ptr);
assert( (recup->size())>0 );
int dest = *(recup->begin());
assert(dest!=myrank);
void *buf = RegionAndDataPackaging( pr, dest, de );
AP_send(buf);
sendcounts[dest]++;
}
RIter_delete(rit);
AP_check_sends(AP_NOFLAGS);
AP_reduce_nsends(sendcounts);
/*receive Regions and data*/
int message=0;
int count;
while (!AP_recv_count(&count) || message<count) {
void *msg;
int from;
int tag;
int size;
int recv;
recv = AP_recv(MPI_ANY_SOURCE, de.tag(), AP_BLOCKING|AP_DROPOUT,
&msg, &size, &from, &tag);
if(recv) {
message++;
RegionAndDataUnpackaging( mesh, msg, from, de);
AP_free(msg);
}
}
AP_check_sends(AP_WAITALL);
MPI_Barrier(MPI_COMM_WORLD);
delete [] sendcounts;
}
// -------------------------------------------------------------------
// -------------------------------------------------------------------
// -------------------------------------------------------------------
void MigrateEntitiesAndData(pMesh mesh, pMeshDataId tagDest,
MDB_DataExchanger &de)
{
MigrateVerticesAndData( mesh, tagDest, de);
MigrateEdgesAndData( mesh, tagDest, de);
MigrateFacesAndData( mesh, tagDest, de);
MigrateRegionsAndData( mesh, tagDest, de);
}
}
#endif
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