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mafft (7.475-1) unstable; urgency=medium
* Team upload.
* New upstream version
* Standards-Version: 4.5.1 (routine-update)
-- Steffen Moeller <moeller@debian.org> Mon, 07 Dec 2020 18:22:24 +0100
mafft (7.471-1) unstable; urgency=medium
* Team upload.
* New upstream version
* debhelper-compat 13 (routine-update)
-- Michael R. Crusoe <crusoe@debian.org> Wed, 08 Jul 2020 15:59:06 +0200
mafft (7.467-1) unstable; urgency=medium
* Team upload.
* New upstream version
-- Steffen Moeller <moeller@debian.org> Fri, 15 May 2020 13:15:02 +0200
mafft (7.464-1) unstable; urgency=medium
* Team upload.
* New upstream version
-- Steffen Moeller <moeller@debian.org> Sun, 03 May 2020 19:21:55 +0200
mafft (7.453-2) unstable; urgency=medium
* Team upload
[ Steffen Möller ]
* Update metadata - added ref to bio.tools
[ Nilesh Patra ]
* Add patch for GCC-10
Closes: #957512
[ Andreas Tille ]
* Standards-Version: 4.5.0 (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
-- Nilesh Patra <npatra974@gmail.com> Fri, 17 Apr 2020 21:50:30 +0200
mafft (7.453-1) unstable; urgency=medium
* Team upload.
* New upstream version
* Standards-Version: 4.4.1
* Trim trailing whitespace.
* Use secure URI in Homepage field.
* Set fields Upstream-Name, Upstream-Contact in debian/copyright.
* Remove obsolete fields Name, Contact from debian/upstream/metadata.
-- Steffen Moeller <moeller@debian.org> Thu, 21 Nov 2019 17:27:17 +0100
mafft (7.429-1) unstable; urgency=medium
* Team upload.
* New upstream version
* debhelper-compat 12
* Created with routine-update script.
* Removed non-applying patch that removed bashism in bash script
* Standards-Version: 4.4.0
-- Steffen Moeller <moeller@debian.org> Sat, 27 Jul 2019 12:56:27 +0200
mafft (7.407-2) unstable; urgency=medium
[ Helmut Grohne ]
* Fix FTCBFS: Let dh_auto_build pass cross tools to make. (Closes: #914715)
* Also simplify debian/rules using --sourcedirectory.
[ Andreas Tille ]
* Remove trailing whitespace in debian/changelog
-- Andreas Tille <tille@debian.org> Sun, 02 Dec 2018 11:39:45 +0100
mafft (7.407-1) unstable; urgency=medium
* Team upload.
* New upstream version.
7.380–7.392 had a bug in the --add and --merge options
* Standards-Version: 4.2.1
-- Steffen Moeller <moeller@debian.org> Wed, 28 Nov 2018 12:46:29 +0100
mafft (7.402-1) unstable; urgency=medium
* New upstream version
-- Andreas Tille <tille@debian.org> Mon, 28 May 2018 16:17:10 +0200
mafft (7.397-1) unstable; urgency=medium
[ Steffen Moeller ]
* debian/upstream/metadata:
- Added references to registries
- yamllint cleanliness
[ Andreas Tille ]
* New upstream version
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.4
* debhelper 11
* Secure URI in watch file
-- Andreas Tille <tille@debian.org> Thu, 26 Apr 2018 22:18:47 +0200
mafft (7.310-1) unstable; urgency=medium
* New upstream version
* Move packaging from SVN to Git
* Standards-Version: 4.1.0 (no changes needed)
-- Andreas Tille <tille@debian.org> Tue, 12 Sep 2017 14:38:51 +0200
mafft (7.307-1) unstable; urgency=medium
* New upstream version
* debhelper 10
* update d/copyright
* d/watch: version=4
-- Andreas Tille <tille@debian.org> Mon, 09 Jan 2017 15:58:36 +0100
mafft (7.305-1) unstable; urgency=medium
* New upstream version
-- Andreas Tille <tille@debian.org> Tue, 16 Aug 2016 14:45:35 +0200
mafft (7.294-1) unstable; urgency=medium
* New upstream version
* cme fix dpkg-control
* /usr/bin/mafft-sparsecore.rb is non-zero - remove the test in debian/rules
* Better hardening
-- Andreas Tille <tille@debian.org> Wed, 18 May 2016 17:59:56 +0200
mafft (7.271-1) unstable; urgency=medium
* New upstream version
-- Andreas Tille <tille@debian.org> Wed, 27 Jan 2016 19:44:13 +0100
mafft (7.270-1) unstable; urgency=medium
* New upstream version
-- Andreas Tille <tille@debian.org> Wed, 30 Dec 2015 19:52:50 +0100
mafft (7.266-1) unstable; urgency=medium
* New upstream version
* Fix bashism
Closes: #772305
-- Andreas Tille <tille@debian.org> Sat, 05 Dec 2015 23:44:00 +0100
mafft (7.245-1) unstable; urgency=medium
* New upstream version
-- Andreas Tille <tille@debian.org> Mon, 27 Jul 2015 21:06:58 +0200
mafft (7.221-1) unstable; urgency=medium
* New upstream version
-- Andreas Tille <tille@debian.org> Fri, 29 May 2015 16:24:10 +0200
mafft (7.215-1) experimental; urgency=medium
* Upload to experimental
-- Andreas Tille <tille@debian.org> Sat, 28 Feb 2015 23:42:02 +0100
mafft (7.215-0biolinux1) trusty; urgency=medium
* New upstream.
* Add convoluted cleanup of zero-byte file
* Add mafft-profile to /usr/bin.
-- Tim Booth <tbooth@ceh.ac.uk> Thu, 26 Feb 2015 12:00:41 +0000
mafft (7.205-1) unstable; urgency=medium
* New upstream version
-- Andreas Tille <tille@debian.org> Thu, 23 Oct 2014 22:28:10 +0200
mafft (7.187-1) unstable; urgency=medium
* New upstream release.
* Conforms to Policy 3.9.6.
-- Charles Plessy <plessy@debian.org> Sun, 05 Oct 2014 09:00:33 +0900
mafft (7.164-1) unstable; urgency=medium
* New upstream version
-- Andreas Tille <tille@debian.org> Mon, 04 Aug 2014 15:04:10 +0200
mafft (7.158-1) unstable; urgency=medium
* New upstream release.
-- Charles Plessy <plessy@debian.org> Sun, 13 Jul 2014 20:26:22 +0900
mafft (7.157-1) unstable; urgency=medium
* New upstream release.
* debian/control
- Added substitution variable ${perl:Depends}, used by Debhelper.
- Recommend libwww-perl used by the script ‘seekquencer_premafft.pl’.
-- Charles Plessy <plessy@debian.org> Wed, 18 Jun 2014 08:10:02 +0900
mafft (7.149-1) unstable; urgency=medium
* New upstream release.
-- Charles Plessy <plessy@debian.org> Sat, 12 Apr 2014 13:46:13 +0900
mafft (7.147-1) unstable; urgency=medium
* New upstream release.
-- Charles Plessy <plessy@debian.org> Sun, 30 Mar 2014 19:40:37 +0900
mafft (7.130-1) unstable; urgency=low
* New upstream release.
* Correct ‘XS-Testsuite’ to ‘Testsuite’ in debian/control.
-- Charles Plessy <plessy@debian.org> Sun, 19 Jan 2014 08:25:50 +0900
mafft (7.127-1) unstable; urgency=low
* New upstream release.
* debian/tests/with-example-data: Don't write progress to stderr on success.
Closes: #728190, thanks to Martin Pitt <martin.pitt@ubuntu.com>.
* Conforms with Policy 3.9.5.
* Pass CPPFLAGS within CFLAGS.
-- Charles Plessy <plessy@debian.org> Sat, 30 Nov 2013 17:30:14 +0900
mafft (7.123-1) unstable; urgency=low
* New upstream version.
* Correct watch file, which was downloading the non-free version.
This error did not affect the current stable release of Debian.
* debian/tests/with-example-data: disable multithreading to stabilise output.
-- Charles Plessy <plessy@debian.org> Wed, 16 Oct 2013 08:22:20 +0900
mafft (7.058-1) unstable; urgency=low
* New upstream version incorporated debian/patches
Closes: #715827, #715830, #715831, #715847, #715881
-- Andreas Tille <tille@debian.org> Sun, 04 Aug 2013 08:51:10 +0200
mafft (7.055-1) unstable; urgency=low
[ Charles Plessy ]
* Signal the use of autopkgtest in debian/control (closes: #692683).
[ Andreas Tille ]
* New upstream version
* debian/README.source: removed because redundant
* debian/patches/hardening.patch: Enable propagation of hardening
options
* debian/control: use anonscm in Vcs fields
-- Andreas Tille <tille@debian.org> Tue, 30 Jul 2013 13:39:43 +0200
mafft (6.940-1) unstable; urgency=low
[ Charles Plessy ]
* New upstream release (no new license nor copyright statement).
* Removed unnecessary build-dependance on quilt.
* Test for regressions with autopkgtest insted of doing it at build time.
(debian/control, debian/tests/control, debian/tests/with-example-data)
* debian/control:
- Removed 'Pre-Depends: dpkg (>= 1.15.6)' now that Ubuntu LTS 12.04 is out.
- Increment Standards-Version to show conformance with Policy 3.9.4.
- Removed DM-Upload-Allowed field.
- Normalised with the command cme fix dpkg-control.
- Use Debhelper 9 (also debian/compat).
* Pass dpkg build flags in debian/rules.
[ Andreas Tille ]
* debian/upstream:
- Single Reference field instead of Reference-*
- Add additional reference from tasks file
- Authors in BibTeX conform format
-- Charles Plessy <plessy@debian.org> Sun, 14 Oct 2012 15:42:54 +0900
mafft (6.864-1) unstable; urgency=low
* New upstream release.
* Pre-Depends on dpkg (>= 1.15.6) for xz compression support (debian/control).
* Renamed debian/README.Debian debian/README.test.
* Track the new website in debian/watch.
-- Charles Plessy <plessy@debian.org> Thu, 12 Jan 2012 19:00:31 +0900
mafft (6.860-1) unstable; urgency=low
* New upstream release.
* Simplified debian/watch.
* Updated Homepage (debian/control).
* Compress binary package with xz (debian/control).
-- Charles Plessy <plessy@debian.org> Sun, 18 Sep 2011 14:43:10 +0900
mafft (6.859-1) unstable; urgency=low
* New upstream release.
* Converted debian/copyright to machine-readable (DEP 5) format.
-- Charles Plessy <plessy@debian.org> Sat, 27 Aug 2011 12:06:00 +0900
mafft (6.857-1) unstable; urgency=low
* New upstream version.
* Enable multithread, correct FHS path (debian/rules).
* Removed extra manpage copies instead of patching Makefile and
installing via debhleper (debian/patches, debian/rules, debian/manpages).
* Removed debian/dirs, not needed anymore.
* Run the tests after installation, and allow them to fail (debian/rules).
* Build when running debian/rules build (override typo, Closes: #636634).
* Corrected VCS fields in debian/control.
* Incremented Standards-Version to reflect conformance wiht Policy 3.9.2
(debian/control, no changes needed).
-- Charles Plessy <plessy@debian.org> Fri, 05 Aug 2011 09:54:09 +0900
mafft (6.850-1) unstable; urgency=low
* New upstream version
* Adapted patch to new upstream
* Debhelper 8 (control + compat)
* debian/rules: Switch to dh
* debian/links: override broken symlinks created in Makefile
-- Andreas Tille <tille@debian.org> Sat, 12 Mar 2011 00:02:43 +0100
mafft (6.833-1) unstable; urgency=low
* New upstream version
-- Andreas Tille <tille@debian.org> Wed, 17 Nov 2010 13:51:28 +0100
mafft (6.815-1) unstable; urgency=low
* New upstream version
* Switch to source format 3.0 (quilt)
* Standards-Version: 3.9.1 (no changes needed)
-- Andreas Tille <tille@debian.org> Thu, 05 Aug 2010 10:29:50 +0200
mafft (6.811-1) unstable; urgency=low
* New upstream version
* Standards-Version: 3.8.4 (no changes needed)
-- Andreas Tille <tille@debian.org> Thu, 24 Jun 2010 13:08:06 +0200
mafft (6.717-1) unstable; urgency=low
* New upstream version
* Added a few informations about Upstream in debian/upstream-metadata.yaml.
* Documented how this package is tested in debian/README.Debian.
* Refreshed debian/copyright, using the verbatim upstream license,
indented with a tabulation.
-- Charles Plessy <plessy@debian.org> Mon, 14 Dec 2009 13:02:59 +0900
mafft (6.716-1) unstable; urgency=low
* New upstream version
-- Andreas Tille <tille@debian.org> Tue, 03 Nov 2009 12:39:12 +0100
mafft (6.713-1) unstable; urgency=low
[ David Paleino ]
* debian/control:
- removed myself from Uploaders
[ Andreas Tille ]
* New upstream version
* debian/control:
- Standards-Version: 3.8.3 (no changes needed)
- s/Debian-Med/Debian Med/
- Recommends: blast2, lynx, ruby (instead of Suggests - we have a Ruby
script in /usr/bin using blast and lynx.
* debhelper 7
* No need for debian/patches/Securisation-by-mktemp-usage.patch any more
* debian/watch: Handle -with.*-extensions naming - we are dealing
with the without-extensions tarball in Debian
-- Andreas Tille <tille@debian.org> Mon, 28 Sep 2009 09:02:30 +0200
mafft (6.240-2) unstable; urgency=high
[ Charles Plessy ]
* debian/control:
- Moved the Homepage: field out from the package's description.
- Enhances: t-coffee.
* Updated my email address.
* Securisation of the temorary files of mafft-homologs:
- debian/control: build-depend on quilt.
- debian/rules: modified to use quilt.
- debian/README.source: signals that the package uses quilt.
- debian/patches: added a patch to use non-guessable temporary files
(Closes: #496366). Thanks to Dmitry E. Oboukhov for finding the bug, Thijs
Kinkhorst for preliminary, Kazutaka Katoh for the final implementation,
and Michael Schutte for the final review.
- debian/mafft-homologs.1*, debian/README.Debian: document that the
program is patched.
[ David Paleino ]
* debian/mafft.1, debian/mafft-homologs.1 added - manpages built statically.
* debian/control:
- B-D updated (see above)
- added myself to Uploaders
- moved XS-Vcs-* fields to Vcs-*
- Updated to Standards-Version 3.7.3 (no changes needed)
* debian/rules:
- reflecting static build of manpages
- minor changes
-- Charles Plessy <plessy@debian.org> Mon, 25 Aug 2008 23:30:20 +0900
mafft (6.240-1) unstable; urgency=low
* Initial release (Closes: #409640)
-- Charles Plessy <charles-debian-nospam@plessy.org> Sat, 9 Jun 2007 12:06:43 +0900
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