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Source: mafft
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Charles Plessy <plessy@debian.org>,
Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13)
Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/mafft
Vcs-Git: https://salsa.debian.org/med-team/mafft.git
Homepage: https://mafft.cbrc.jp/alignment/software/
Rules-Requires-Root: no
Package: mafft
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends},
${perl:Depends}
Recommends: blast2,
libwww-perl,
lynx,
ruby
Enhances: t-coffee
Description: Multiple alignment program for amino acid or nucleotide sequences
MAFFT is a multiple sequence alignment program which offers three
accuracy-oriented methods:
* L-INS-i (probably most accurate; recommended for <200 sequences;
iterative refinement method incorporating local pairwise alignment
information),
* G-INS-i (suitable for sequences of similar lengths; recommended for
<200 sequences; iterative refinement method incorporating global
pairwise alignment information),
* E-INS-i (suitable for sequences containing large unalignable regions;
recommended for <200 sequences),
and five speed-oriented methods:
* FFT-NS-i (iterative refinement method; two cycles only),
* FFT-NS-i (iterative refinement method; max. 1000 iterations),
* FFT-NS-2 (fast; progressive method),
* FFT-NS-1 (very fast; recommended for >2000 sequences; progressive
method with a rough guide tree),
* NW-NS-PartTree-1 (recommended for ∼50,000 sequences; progressive
method with the PartTree algorithm).
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