File: with-example-data

package info (click to toggle)
mafft 7.475-1
  • links: PTS, VCS
  • area: main
  • in suites: bullseye
  • size: 3,792 kB
  • sloc: ansic: 94,529; sh: 2,522; ruby: 1,044; perl: 668; makefile: 478
file content (11 lines) | stat: -rw-r--r-- 641 bytes parent folder | download | duplicates (6) 
1
2
3
4
5
6
7
8
9
10
11
 
#!/bin/sh -e

MAFFT="mafft --quiet --thread 0"
TESTDATADIR=/usr/share/doc/mafft/test/

$MAFFT                               $TESTDATADIR/sample | diff $TESTDATADIR/sample.fftns2 -
$MAFFT --maxiterate 100              $TESTDATADIR/sample | diff $TESTDATADIR/sample.fftnsi -
$MAFFT --globalpair                  $TESTDATADIR/sample | diff $TESTDATADIR/sample.gins1 -
$MAFFT --globalpair --maxiterate 100 $TESTDATADIR/sample | diff $TESTDATADIR/sample.ginsi -
$MAFFT --localpair                   $TESTDATADIR/sample | diff $TESTDATADIR/sample.lins1 -
$MAFFT --localpair --maxiterate 100  $TESTDATADIR/sample | diff $TESTDATADIR/sample.linsi -