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mafft for Debian
----------------
The mafft program is tested when we assemble our binary packages in our build
network. The following commands are run and compared to a reference output:
mafft test/sample | diff test/sample.fftns2 -
mafft --maxiterate 100 test/sample | diff test/sample.fftnsi -
mafft --globalpair test/sample | diff test/sample.gins1 -
mafft --globalpair --maxiterate 100 test/sample | diff test/sample.ginsi -
mafft --localpair test/sample | diff test/sample.lins1 -
mafft --localpair --maxiterate 100 test/sample | diff test/sample.linsi -
The test sample and the reference output are distributed compressed in the
mafft binary package in the ‘/usr/share/doc/mafft/test’ directory. You can copy
this directory to a temporary place, uncompress the files and run the above
commands to reproduce the tests on your local installation.
-- Charles Plessy <plessy@debian.org> Mon, 14 Dec 2009 12:43:21 +0900
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