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Source: mapdamage
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper (>= 9),
python-all,
dh-python,
python-setuptools
Standards-Version: 3.9.8
Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/mapdamage.git
Vcs-Git: https://anonscm.debian.org/git/debian-med/mapdamage.git
Homepage: https://ginolhac.github.io/mapDamage/
Package: mapdamage
Architecture: all
Depends: ${python:Depends},
${misc:Depends},
r-base-core,
r-cran-gam,
r-cran-ggplot2,
r-cran-inline,
seqtk,
python-pysam,
r-cran-inline,
r-cran-ggplot2,
r-cran-gam,
r-cran-rcpp,
r-cran-rcppgsl,
libopenblas-dev | libblas-dev | libatlas-base-dev | libblas.so,
libopenblas-dev | liblapack-dev | libatlas-base-dev | liblapack.so
Description: tracking and quantifying damage patterns in ancient DNA sequences
MapDamage is a computational framework written in Python and R, which
tracks and quantifies DNA damage patterns among ancient DNA sequencing
reads generated by Next-Generation Sequencing platforms.
.
MapDamage is developed at the Centre for GeoGenetics by the
Orlando Group.
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