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#!/usr/bin/make -f
# DH_VERBOSE := 1
include /usr/share/dpkg/default.mk
TESTDIR := debian/$(DEB_SOURCE)/usr/share/doc/$(DEB_SOURCE)/tests
%:
dh $@ --with python3 --buildsystem=pybuild
override_dh_fixperms:
dh_fixperms
find debian -name checkLibraries.R -exec chmod +x \{\} \;
find debian -name runGeneral.R -exec chmod +x \{\} \;
override_dh_auto_test:
ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
cd mapdamage && \
PATH=$(PATH):$(CURDIR)/bin \
PYTHONPATH=$(shell pybuild --print build_dir --interpreter python3) \
python3 mp_test.py
endif
override_dh_python3:
dh_python3 --no-ext-rename
override_dh_auto_clean:
dh_auto_clean
rm -f mapdamage/_version.py
rm -f mapdamage/tests/results/Fragmisincorporation_plot.pdf mapdamage/tests/results/Fragmisincorporation_plot.pdf mapdamage/tests/results/Length_plot.pdf mapdamage/tests/results/Length_plot.pdf
rm -f mapdamage/tests/fake1.fasta.fai mapdamage/tests/results/3pGtoA_freq.txt mapdamage/tests/results/5pCtoT_freq.txt mapdamage/tests/results/Runtime_log.txt mapdamage/tests/results/dnacomp.txt mapdamage/tests/results/lgdistribution.txt mapdamage/tests/results/misincorporation.txt mapdamage/tests/test.rescaled.sam
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