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#!/usr/bin/make -f
include /usr/share/dpkg/default.mk
TESTDIR := debian/$(DEB_SOURCE)/usr/share/doc/$(DEB_SOURCE)/tests
export DEB_BUILD_MAINT_OPTIONS=hardening=+all
%:
dh $@ --buildsystem=pybuild
execute_after_dh_fixperms:
find debian -name checkLibraries.R -exec chmod +x \{\} \;
find debian -name runGeneral.R -exec chmod +x \{\} \;
override_dh_auto_test:
ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
set -e \
; for py3 in $(shell py3versions -vs) \
; do cd mapdamage \
; PATH=$(PATH):$(CURDIR)/.pybuild/cpython3_$${py3}/scripts \
PYTHONPATH=$(shell pybuild --print build_dir --interpreter python3) \
python3 mp_test.py \
; cd - \
; done
endif
override_dh_python3:
dh_python3 --no-ext-rename
execute_after_dh_auto_clean:
rm -f mapdamage/_version.py
rm -f mapdamage/tests/results/Fragmisincorporation_plot.pdf
rm -f mapdamage/tests/results/Length_plot.pdf
rm -f mapdamage/tests/fake1.fasta.fai
rm -f mapdamage/tests/results/3pGtoA_freq.txt
rm -f mapdamage/tests/results/5pCtoT_freq.txt
rm -f mapdamage/tests/results/Runtime_log.txt
rm -f mapdamage/tests/results/dnacomp.txt
rm -f mapdamage/tests/results/lgdistribution.txt
rm -f mapdamage/tests/results/misincorporation.txt
rm -f mapdamage/tests/test.rescaled.sam
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