1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29
|
//
// LinearCounter.h
#ifndef LinearCounter_h
#define LinearCounter_h
#include <stdlib.h>
#include <inttypes.h>
#include <stdint.h>
#include <cmath> // for log2f
#include "Bank.h"
#include "Bloom.h"
class LinearCounter{
protected:
Bloom *bloom;
unsigned long desired_size, bloom_size;
public:
void add(bloom_elem kmer);
long count();
int contains(bloom_elem kmer); // dummy, because bloom_pass_reads wants this method to be exposed
bool is_accurate();
LinearCounter(long size);
~LinearCounter();
};
#endif
|