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#!/bin/sh
# autopkgtest check: Run test examples from Mash tutorials
# Author: Sascha Steinbiss <satta@debian.org>
set -e
TESTDIR=$(pwd)/debian/tests
WORKDIR=$(mktemp -d)
trap "rm -rf $WORKDIR" 0 INT QUIT ABRT PIPE TERM
cd $WORKDIR
tar xJvf $TESTDIR/genomes.tar.xz
mash dist genome1.fna genome2.fna
mash sketch genome1.fna
mash sketch genome2.fna
mash dist genome1.fna.msh genome2.fna.msh
mash sketch -o reference genome1.fna genome2.fna
mash info reference.msh
mash dist reference.msh genome3.fna
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