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Source: mash
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Sascha Steinbiss <satta@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper (>= 13),
debhelper-compat (= 13),
capnproto,
libcapnp-dev,
libgsl-dev,
zlib1g-dev,
libmurmurhash-dev,
pkg-config
Build-Depends-Indep: python3-sphinx,
libjs-mathjax,
dh-sequence-sphinxdoc
Standards-Version: 4.6.1
Vcs-Browser: https://salsa.debian.org/med-team/mash
Vcs-Git: https://salsa.debian.org/med-team/mash.git
Homepage: https://mash.readthedocs.io
Rules-Requires-Root: no
Package: mash
Architecture: amd64 arm64 mips64el ppc64el s390x alpha ppc64 riscv64
Depends: ${shlibs:Depends},
${misc:Depends}
Description: fast genome and metagenome distance estimation using MinHash
Mash uses MinHash locality-sensitive hashing to reduce large biosequences to
a representative sketch and rapidly estimate pairwise distances between
genomes or metagenomes. Mash sketch databases effectively delineate known
species boundaries, allow construction of approximate phylogenies, and can be
searched in seconds using assembled genomes or raw sequencing runs from
Illumina, Pacific Biosciences, and Oxford Nanopore.
For metagenomics, Mash scales to thousands of samples and can replicate Human
Microbiome Project and Global Ocean Survey results in a fraction of the time.
Package: libmash-dev
Architecture: amd64 arm64 mips64el ppc64el s390x alpha ppc64 riscv64
Section: libdevel
Depends: ${shlibs:Depends},
${misc:Depends}
Description: development headers and static library for Mash
This package contains C++ development headers and a static library to
build custom programs utilizing Mash, a MinHash based genome distance
estimator.
Package: mash-doc
Architecture: all
Multi-Arch: foreign
Section: doc
Depends: ${misc:Depends},
${sphinxdoc:Depends},
libjs-mathjax
Built-Using: ${sphinxdoc:Built-Using}
Description: documentation for Mash
This package contains further documentation (tutorials, explanations,
etc.) for Mash, a MinHash based genome distance estimator. The documentation
is provided in HTML format.
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