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'\" t
.\" Title: mash
.\" Author: [see the "AUTHOR(S)" section]
.\" Generator: Asciidoctor 2.0.10
.\" Date: 2019-12-13
.\" Manual: \ \&
.\" Source: \ \&
.\" Language: English
.\"
.TH "MASH" "1" "2019-12-13" "\ \&" "\ \&"
.ie \n(.g .ds Aq \(aq
.el .ds Aq '
.ss \n[.ss] 0
.nh
.ad l
.de URL
\fI\\$2\fP <\\$1>\\$3
..
.als MTO URL
.if \n[.g] \{\
. mso www.tmac
. am URL
. ad l
. .
. am MTO
. ad l
. .
. LINKSTYLE blue R < >
.\}
.SH "NAME"
mash \- fast genome and metagenome distance estimation using MinHash
.SH "SYNOPSIS"
.sp
\fBmash\fP <command> [options] [arguments ...]
.SH "DESCRIPTION"
.sp
\fBmash\fP is the main executable for the \fBMash\fP software. The actual
functionality is provided by the subtools (\(aqcommands\(aq):
.SS "Commands"
.sp
\fBbounds\fP
.RS 4
Print a table of Mash error bounds.
.RE
.sp
\fBdist\fP
.RS 4
Estimate the distance of query sequences to references.
.RE
.sp
\fBinfo\fP
.RS 4
Display information about sketch files.
.RE
.sp
\fBpaste\fP
.RS 4
Create a single sketch file from multiple sketch files.
.RE
.sp
\fBscreen\fP
.RS 4
Determine whether query sequences are within a larger pool of sequences.
.RE
.sp
\fBsketch\fP
.RS 4
Create sketches (reduced representations for fast operations).
.RE
.sp
\fBtriangle\fP
.RS 4
Estimate a lower\-triangular distance matrix.
.RE
.SH "SEE ALSO"
.sp
mash\-dist(1), mash\-info(1), mash\-paste(1), mash\-screen(1), mash\-sketch(1), mash\-triangle(1)
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