File: massxpert-data.xml

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massxpert 7.0.0-2
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<?xml version="1.0"?>
<!DOCTYPE refentry PUBLIC "-//OASIS//DTD DocBook V4.1//EN"
[
<!ENTITY progname "massxpert">
<!ENTITY progName "massXpert">
]>

<refentry>

	<refentryinfo>
		<date> 03 july 2017</date>
	</refentryinfo>

	<refmeta>
		<refentrytitle>
			<application>&progName;-data</application>
		</refentrytitle>
		<manvolnum>7</manvolnum>
		<refmiscinfo>&progName;-data package that ships all the polymer chemistry
			definitions required to run &progName;</refmiscinfo>
	</refmeta>

	<refnamediv>
		<refname>
			<application>&progName;-data</application>
		</refname>

		<refpurpose>
			Linear (bio)-polymer chemistry definitions for use with &progName;
		</refpurpose>
	</refnamediv>

	<refsect1>
		<title>DESCRIPTION</title>
		<para>

			This manual page documents briefly the
			<command>&progname;-data</command> package shipped within the
			<filename>msXpertSuite</filename> software suite.  

			This package contains the architecture-independent data that
			are required for the proper functioning of the &progname;
			program (shipped in the msxpertsuite package). The data contained in the package are
			about atom definitions  and polymer chemistry definitions (proteins,
			saccharides, DNA, RNA).
		</para>
	</refsect1>

	<refsect1>
		<title>Bibliographic reference to be cited</title>
		<para>
			F. Rusconi (2009) massXpert 2: a cross-platform software environment for
			polymer chemistry modelling and simulation/analysis of mass spectrometric
			data. <emphasis>Bioinformatics</emphasis>, 25:2741-2742.
			doi:10.1093/bioinformatics/btp504.
		</para>
	</refsect1>

	<refsect1>
		<title>See also</title>
		<para>
			<emphasis>&progname; (1)</emphasis>,<emphasis>msxpertsuite-doc (7)</emphasis>
		</para>
	</refsect1>

	<refsect1>
		<title>Useful reading</title>
		<para>
			The program is documented fully in the <emphasis>&progName; User
				Manual</emphasis>, that is packaged in msxpertsuite-doc. That manual is
			available in the form of a PDF-formatted file
			(<filename>/usr/share/doc/msxpertsuite/&progname;-doc.pdf</filename>).
		</para>
	</refsect1>

	<refsect1>
		<title>AUTHOR</title>
		<para>
			<author>
				<firstname>Filippo</firstname>
				<surname>Rusconi &lt;lopippo@debian.org&gt;</surname>
				<authorblurb>
					<para>
						This manual page was written by Filippo Rusconi
						&lt;lopippo@debian.org&gt; (initial writing september
						2009). Permission is granted to copy, distribute and/or
						modify this document under the terms of the GNU General
						Public License, Version 3, published by the Free Software
						Foundation.
					</para>

					<para>
						On a Debian system the complete text of the GNU General
						Public License version 3 can be found in the file
						<filename>/usr/share/common-licenses/GPL\-3</filename>.
					</para>

				</authorblurb>
			</author>
		</para>
	</refsect1>
</refentry>