File: small.alignment

package info (click to toggle)
mauve-aligner 2.4.0%2B4736-1
  • links: PTS, VCS
  • area: main
  • in suites: buster
  • size: 2,480 kB
  • sloc: java: 28,417; xml: 300; sh: 97; makefile: 21
file content (58 lines) | stat: -rw-r--r-- 4,037 bytes parent folder | download | duplicates (5)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
#FormatVersion Mauve1
#Sequence1File	C:\Documents and Settings\pinfield\workspace\mauve\testdata\S_bayanus_small.fasta
#Sequence1Format	FastA
#Sequence2File	C:\Documents and Settings\pinfield\workspace\mauve\testdata\S_cerevisiae_small.gbk
#Sequence2Format	GenBank
#Annotation2File	C:\Documents and Settings\pinfield\workspace\mauve\testdata\S_cerevisiae_small.gbk
#Annotation2Format	GenBank
> 1:566-608 + C:\Documents and Settings\pinfield\workspace\mauve\testdata\S_bayanus_small.fasta
CTTATCCACCACACCTCATTAAAACG------------------------------------------------------
--------------------------TGTA--------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------TTTACTAGAAATT
> 2:305-609 + C:\Documents and Settings\pinfield\workspace\mauve\testdata\S_cerevisiae_small.gbk
cttctacccacca---tattgaaacgCTAACAAATGATCGTAAATAACACACACGTGCTTACCCTACCACTTTATACCAC
CACCACATGCCATACTCACCCTCACTTGTATACTGATTTTACGTACGCACACGGATGCTACAGTATATACCATCTCAAAC
TTACCCTACTCTCAGATTCCACTTCACTCCATGGCCCATCTCTCACTGAATCAGTACCAAATGCACTCACATCATTATGC
ACGGCACTTGCCTCAGCGGTCTATACCCTGTGCCATTTACCCATAACGCCCATCAttatccacatttt
=
> 1:1-565 + C:\Documents and Settings\pinfield\workspace\mauve\testdata\S_bayanus_small.fasta
TTATTCAACATCCTTCCACACACACACACACACTCTCACACACACACTATATACATAATATTTTATAACCGCCGCTGCTA
ATTCTTCGCAAGGAAACCCGCCTCTTTCTCTCTCTCTATCTCTATCTCTCCCCACGGTGAGTTATACGCCCTTTATAATA
CAATAGTTTTCTTTCTCTCTTTTACCCACTACCCTTATTTTCTTTTACCCGGACTGCGCTTTTCTCGCACTACGTAATTG
AAGTCATAACTATACAGCACCTTTGTTGGGTCTATGATCCGGAGACCTGTGAGGCCAGACAGTACTAGACAGCCTATGGT
CCACAATCTCGTCACCACAGGAATGTCCCCTAGGATATTCAGTATCACAGCATCCATAGTCGTTTGATCCTAAGTTTTCT
TGGCCCACTACACCAGACAAAATAGTCATGATTGCAAGAGATGTGGAGCTGATGCTGAAAACACCAAAAGTCGTTGATGA
TGCAGCATGTTTTGTGTTTACATTTCAAGATACCGCAGATTGTTAAGTTTTTAGGATAATTGATAATCGTTAGAAGAATG
TTATG
=
> 2:1-304 + C:\Documents and Settings\pinfield\workspace\mauve\testdata\S_cerevisiae_small.gbk
ccacaccacacccacacacccacacaccacaccacacaccacaccacacccacacacacacatcctaacactaccctaac
acagccctaatctaaccctggccaacctgtctctcaacttaccctccattaccctgcctccactcgttaccctgtcccat
tcaaccataccactccgaaccaccatccatccctctacttactaccactcacccaccgttaccctccaattacccatatc
caacccactgccacttaccctaccattaccctaccatccaccatgacctactcaccatactgtt
=
> 1:609-693 + C:\Documents and Settings\pinfield\workspace\mauve\testdata\S_bayanus_small.fasta
TAGAAGTAGGCACCTAAGCAAAAACCCTCTACAAGTATCAAGTACAAAAGATATTCGAGTATGTACAACTCTTTCGGCAA
ACTTC
=
> 2:610-2000 + C:\Documents and Settings\pinfield\workspace\mauve\testdata\S_cerevisiae_small.gbk
gatatctatatctcattcggcggtcccaaatattgtataactgcccttaatacatacgttataccacttttgcaccatat
acttaccactccatttatatacacttatgtcaatattacagaaaaatccccacaaaaatcacctaaacataaaaatattc
tacttttcaacaataatacataaacatattggcttgtggtagcaacactatcatggtatcactaacgtaaaagttcctca
atattgcaatttgcttgaacggatgctatttcagaatatttcgtacttacacaggccatacattagaataatatgtcaca
tcactgtcgtaacactctttattcaccgagcaataatacggtagtggctcaaactcatgcgggtgctatgaaaatagccc
tcatgtacgtctcctccaagccctgttgtctcttacccggatgttcaaccaaaagctacttactacctttattttatgtt
tactttttataggttgtctttttatcccacttcttcgcacttgtctctcgctactgccgtgcaacaaacactaaatcaaa
acaatgaaatactactacatcaaaacgcattttccctagaaaaaaaattttcttacaatatactatactacacaatacat
aatcactgactttcgtaacaacaatttccttcactctccaacttctctgctcgaatctctacatagtaatattatatcaa
atctaccgtctggaacatcatcgctatccagctctttgtgaaccgctaccatcagcatgtacagtggtaccctcgtgtta
tctgcagcgagaacttcaacgtttgccaaatcaagccaatgtggtaacaaccacatctccgaaatctgctccaaaagata
ttccagtttctgccgaaatgttttattgtagaacagccctatcagcatcgacaggaatgccgtccaatgcggcactttag
atggggtaactcccagcgcaagctgatctcgcaagtgcattcctagacttaattcatatctgctcctcaactgtcgatga
tgcctgctaaactgcagcttgacgtactgcggaccctgcagtccagcgctcgtcatggaacgcaaacgctgaaaaactcc
aactttctcgagcgcttccacaaagaccgtatcgtcttttgcctcccattcttcccggcactttttttcgtcccagttca
aaaagtactgcagcacctctgtcttcgattcacgcaagttgctccatactttataatacaactctttgatctgccttcca
gacatgcggaaaacttggctcccttgcttgcctcttgtcgaatccaatacactaattgtttctcttcttctagtaatggc
caggtaccaagcataatttctctgtatctga
=