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Source: mauve-aligner
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>,
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
javahelper,
default-jdk,
ant,
ant-contrib,
junit,
libbiojava-java (>= 1:1.9.5+dfsg),
libcommons-cli-java,
libdbus-java,
libzeus-jscl-java,
libunixsocket-java,
imagemagick
Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/mauve-aligner
Vcs-Git: https://salsa.debian.org/med-team/mauve-aligner.git
Homepage: https://darlinglab.org/mauve/
Rules-Requires-Root: no
Package: mauve-aligner
Architecture: all
Depends: ${java:Depends},
java-wrappers,
${misc:Depends},
libbiojava-java (>= 1:1.9.5+dfsg-1),
progressivemauve
Recommends: ${java:Recommends}
Description: multiple genome alignment
Mauve is a system for efficiently constructing multiple genome alignments
in the presence of large-scale evolutionary events such as rearrangement
and inversion. Multiple genome alignment provides a basis for research
into comparative genomics and the study of evolutionary dynamics. Aligning
whole genomes is a fundamentally different problem than aligning short
sequences.
.
Mauve has been developed with the idea that a multiple genome aligner
should require only modest computational resources. It employs algorithmic
techniques that scale well in the amount of sequence being aligned. For
example, a pair of Y. pestis genomes can be aligned in under a minute,
while a group of 9 divergent Enterobacterial genomes can be aligned in
a few hours.
.
Mauve computes and interactively visualizes genome sequence comparisons.
Using FastA or GenBank sequence data, Mauve constructs multiple genome
alignments that identify large-scale rearrangement, gene gain, gene loss,
indels, and nucleotide substutition.
.
Mauve is developed at the University of Wisconsin.
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