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"""The Volume module visualizes scalar fields using volumetric
visualization techniques. This supports ImageData and
UnstructuredGrid data. It also supports the FixedPointRenderer for
ImageData. However, the performance is slow so your best bet is
probably with the ImageData based renderers.
"""
# Author: Prabhu Ramachandran <prabhu@aero.iitb.ac.in>
# Copyright (c) 2006-2020, Enthought, Inc.
# License: BSD Style.
# Standard imports
from math import cos, sqrt, pi
from vtk.util import vtkConstants
# Enthought library imports.
from traits.api import Instance, Property, List, ReadOnly, \
Str, Button, Tuple, Dict
from traitsui.api import View, Group, Item, InstanceEditor
from tvtk.api import tvtk
from tvtk.common import suppress_vtk_warnings
from tvtk.util.gradient_editor import hsva_to_rgba, GradientTable
from tvtk.util.traitsui_gradient_editor import VolumePropertyEditor
from tvtk.util.ctf import save_ctfs, load_ctfs, \
rescale_ctfs, set_lut, PiecewiseFunction, ColorTransferFunction
from apptools.persistence import state_pickler
# Local imports
from mayavi.core.pipeline_info import PipelineInfo
from mayavi.core.module import Module
from mayavi.core.common import error
from mayavi.core.trait_defs import DEnum
from mayavi.core.lut_manager import LUTManager
from mayavi.core.utils import DataSetHelper
######################################################################
# Utility functions.
######################################################################
def is_volume_pro_available():
"""Returns `True` if there is a volume pro card available.
"""
try:
map = tvtk.VolumeProMapper()
except AttributeError:
return False
else:
return map.number_of_boards > 0
def find_volume_mappers():
res = []
with suppress_vtk_warnings():
obj = tvtk.Object()
obj.global_warning_display = False
for name in dir(tvtk):
if 'Volume' in name and 'Mapper' in name:
try:
klass = getattr(tvtk, name)
inst = klass()
except TypeError:
pass
else:
res.append(name)
ignores = ['VolumeTextureMapper3D', 'VolumeProMapper']
for name in ignores:
if name in res:
res.remove(name)
return res
def default_OTF(x1, x2):
"""Creates a default opacity transfer function.
"""
maxs = max(x1, x2)
mins = min(x1, x2)
otf = PiecewiseFunction()
otf.add_point(mins, 0.0)
otf.add_point(maxs, 0.2)
return otf
def make_CTF(x1, x2, hue_range=(2.0/3.0, 0.0),
sat_range=(1.0, 1.0), val_range=(1.0, 1.0),
n=10, mode='sqrt'):
"""Creates a CTF as per given arguments. Lets one set a hue,
saturation and value range. The mode can be one of 'sqrt', or
'linear'. The idea of this function is to create a CTF that is
similar to the LUT being used. 's_curve' is not implemented.
Patches welcome.
"""
maxs = max(x1, x2)
mins = min(x1, x2)
ds = maxs - mins
dhue = hue_range[1] - hue_range[0]
dsat = sat_range[1] - sat_range[0]
dval = val_range[1] - val_range[0]
ctf = ColorTransferFunction()
try:
ctf.range = (mins, maxs)
except Exception:
# VTK versions < 5.2 don't seem to need this.
pass
if mode == 'sqrt':
for i in range(n+1):
# Generate x in [0, 1]
x = 0.5*(1.0 + cos((n-i)*pi/n)) # Chebyshev nodes.
h = hue_range[0] + dhue*x
s = sat_range[0] + dsat*x
v = val_range[0] + dval*x
r, g, b, a = [sqrt(c) for c in hsva_to_rgba(h, s, v, 1.0)]
ctf.add_rgb_point(mins+x*ds, r, g, b)
elif mode == 'linear':
for i in range(n+1):
# Generate x in [0, 1]
x = float(i)/n # Uniform nodes.
h = hue_range[0] + dhue*x
s = sat_range[0] + dsat*x
v = val_range[0] + dval*x
r, g, b, a = hsva_to_rgba(h, s, v, 1.0)
ctf.add_rgb_point(mins+x*ds, r, g, b)
return ctf
def default_CTF(x1, x2):
"""Creates a default RGB color transfer function. In this case we
default to a red-blue one with the 'sqrt' mode.
"""
return make_CTF(x1, x2,
hue_range=(2.0/3.0, 0.0),
sat_range=(1.0, 1.0),
val_range=(1.0, 1.0),
n=10,
mode='sqrt')
def load_volume_prop_from_grad(grad_file_name, volume_prop,
scalar_range=(0, 255)):
"""Load a ``*.grad`` file (*grad_file_name*) and set the given volume
property (*volume_prop*) given the *scalar_range*.
"""
gt = GradientTable(300)
gt.load(grad_file_name)
gt.store_to_vtk_volume_prop(volume_prop, scalar_range)
def save_volume_prop_to_grad(volume_prop, grad_file_name):
"""Save the given volume property (*volume_prop*) to a ``*.grad`` file
given as *grad_file_name*.
"""
gt = GradientTable(300)
gt.load_from_vtk_volume_prop(volume_prop)
gt.save(grad_file_name)
######################################################################
# `VolumeLutManager` class.
######################################################################
class VolumeLUTManager(LUTManager):
"""Just has a different view than the LUTManager.
"""
view = View(Group(Item(name='show_scalar_bar'),
Item(name='number_of_labels'),
Item(name='shadow'),
Item(name='use_default_name'),
Item(name='data_name'),
label='Scalar Bar',
),
Group(Item(name='_title_text_property',
style='custom',
resizable=True),
show_labels=False,
label='Title'),
Group(Item(name='_label_text_property',
style='custom',
resizable=True),
show_labels=False,
label='Labels'),
resizable=True
)
######################################################################
# `Volume` class.
######################################################################
class Volume(Module):
"""The Volume module visualizes scalar fields using volumetric
visualization techniques. This supports ImageData and
UnstructuredGrid data. It also supports the FixedPointRenderer
for ImageData. However, the performance is slow so your best bet
is probably with the ImageData based renderers.
"""
# The version of this class. Used for persistence.
__version__ = 0
volume_mapper_type = DEnum(values_name='_mapper_types',
desc='volume mapper to use')
ray_cast_function_type = DEnum(values_name='_ray_cast_functions',
desc='Ray cast function to use')
volume = ReadOnly
volume_mapper = Property(record=True)
volume_property = Property(record=True)
ray_cast_function = Property(record=True)
lut_manager = Instance(VolumeLUTManager, args=(), allow_none=False,
record=True)
input_info = PipelineInfo(datasets=['image_data',
'unstructured_grid'],
attribute_types=['any'],
attributes=['scalars'])
########################################
# View related code.
update_ctf = Button('Update CTF')
view = View(Group(Item(name='_volume_property', style='custom',
editor=VolumePropertyEditor,
resizable=True),
Item(name='update_ctf'),
label='CTF',
show_labels=False),
Group(Item(name='volume_mapper_type'),
Group(Item(name='_volume_mapper',
style='custom',
resizable=True),
show_labels=False
),
Item(name='ray_cast_function_type'),
Group(Item(name='_ray_cast_function',
enabled_when='len(_ray_cast_functions) > 0',
style='custom',
resizable=True),
show_labels=False),
label='Mapper',
),
Group(Item(name='_volume_property', style='custom',
resizable=True),
label='Property',
show_labels=False),
Group(Item(name='volume', style='custom',
editor=InstanceEditor(),
resizable=True),
label='Volume',
show_labels=False),
Group(Item(name='lut_manager', style='custom',
resizable=True),
label='Legend',
show_labels=False),
resizable=True
)
########################################
# Private traits
_volume_mapper = Instance(tvtk.AbstractVolumeMapper)
_volume_property = Instance(tvtk.VolumeProperty)
_ray_cast_function = Instance(tvtk.Object)
_mapper_types = List(Str, ['TextureMapper2D', 'RayCastMapper', ])
_available_mapper_types = List(Str)
_ray_cast_functions = List(Str)
current_range = Tuple
# The color transfer function.
_ctf = Instance(ColorTransferFunction)
# The opacity values.
_otf = Instance(PiecewiseFunction)
# A cache for the mappers, a dict keyed by class.
_mapper_cache = Dict
######################################################################
# `object` interface
######################################################################
def __get_pure_state__(self):
d = super(Volume, self).__get_pure_state__()
d['ctf_state'] = save_ctfs(self._volume_property)
for name in ('current_range', '_ctf', '_otf'):
d.pop(name, None)
return d
def __set_pure_state__(self, state):
self.volume_mapper_type = state['_volume_mapper_type']
state_pickler.set_state(self, state, ignore=['ctf_state'])
ctf_state = state['ctf_state']
ctf, otf = load_ctfs(ctf_state, self._volume_property)
self._ctf = ctf
self._otf = otf
self._update_ctf_fired()
######################################################################
# `Module` interface
######################################################################
def start(self):
super(Volume, self).start()
self.lut_manager.start()
def stop(self):
super(Volume, self).stop()
self.lut_manager.stop()
def setup_pipeline(self):
"""Override this method so that it *creates* the tvtk
pipeline.
"""
v = self.volume = tvtk.Volume()
vp = self._volume_property = tvtk.VolumeProperty()
self._ctf = ctf = default_CTF(0, 255)
self._otf = otf = default_OTF(0, 255)
vp.set_color(ctf)
vp.set_scalar_opacity(otf)
vp.shade = True
vp.interpolation_type = 'linear'
v.property = vp
v.on_trait_change(self.render)
vp.on_trait_change(self.render)
available_mappers = find_volume_mappers()
if is_volume_pro_available():
self._mapper_types.append('VolumeProMapper')
available_mappers.append('VolumeProMapper')
self._available_mapper_types = available_mappers
if 'FixedPointVolumeRayCastMapper' in available_mappers:
self._mapper_types.append('FixedPointVolumeRayCastMapper')
self.actors.append(v)
def update_pipeline(self):
"""Override this method so that it *updates* the tvtk pipeline
when data upstream is known to have changed.
This method is invoked (automatically) when any of the inputs
sends a `pipeline_changed` event.
"""
mm = self.module_manager
if mm is None:
return
dataset = mm.source.get_output_dataset()
ug = hasattr(tvtk, 'UnstructuredGridVolumeMapper')
if dataset.is_a('vtkMultiBlockDataSet'):
if 'MultiBlockVolumeMapper' not in self._available_mapper_types:
error('Your version of VTK does not support '
'Multiblock volume rendering')
return
elif dataset.is_a('vtkUniformGridAMR'):
if 'AMRVolumeMapper' not in self._available_mapper_types:
error('Your version of VTK does not support '
'AMR volume rendering')
return
elif ug:
if not dataset.is_a('vtkImageData') \
and not dataset.is_a('vtkUnstructuredGrid'):
error('Volume rendering only works with '
'StructuredPoints/ImageData/UnstructuredGrid datasets')
return
elif not dataset.is_a('vtkImageData'):
error('Volume rendering only works with '
'StructuredPoints/ImageData datasets')
return
self._setup_mapper_types()
self._setup_current_range()
self._volume_mapper_type_changed(self.volume_mapper_type)
self._update_ctf_fired()
self.pipeline_changed = True
def update_data(self):
"""Override this method so that it flushes the vtk pipeline if
that is necessary.
This method is invoked (automatically) when any of the inputs
sends a `data_changed` event.
"""
self._setup_mapper_types()
self._setup_current_range()
self._update_ctf_fired()
self.data_changed = True
######################################################################
# Non-public methods.
######################################################################
def _get_image_data_volume_mappers(self):
check = ('SmartVolumeMapper', 'GPUVolumeRayCastMapper',
'OpenGLGPUVolumeRayCastMapper')
return [x for x in check
if x in self._available_mapper_types]
def _setup_mapper_types(self):
"""Sets up the mapper based on input data types.
"""
dataset = self.module_manager.source.get_output_dataset()
if dataset.is_a('vtkMultiBlockDataSet'):
if 'MultiBlockVolumeMapper' in self._available_mapper_types:
self._mapper_types = ['MultiBlockVolumeMapper']
elif dataset.is_a('vtkUniformGridAMR'):
if 'AMRVolumeMapper' not in self._available_mapper_types:
self._mapper_types = ['AMRVolumeMapper']
elif dataset.is_a('vtkUnstructuredGrid'):
if hasattr(tvtk, 'UnstructuredGridVolumeMapper'):
check = ['UnstructuredGridVolumeZSweepMapper',
'UnstructuredGridVolumeRayCastMapper',
]
mapper_types = []
for mapper in check:
if mapper in self._available_mapper_types:
mapper_types.append(mapper)
if len(mapper_types) == 0:
mapper_types = ['']
self._mapper_types = mapper_types
return
else:
mapper_types = self._get_image_data_volume_mappers()
if dataset.point_data.scalars.data_type not in \
[vtkConstants.VTK_UNSIGNED_CHAR,
vtkConstants.VTK_UNSIGNED_SHORT]:
if 'FixedPointVolumeRayCastMapper' \
in self._available_mapper_types:
mapper_types.append('FixedPointVolumeRayCastMapper')
elif len(mapper_types) == 0:
error('Available volume mappers only work with '
'unsigned_char or unsigned_short datatypes')
else:
check = ['FixedPointVolumeRayCastMapper',
'VolumeProMapper', 'TextureMapper2D', 'RayCastMapper',
'TextureMapper3D'
]
for mapper in check:
if mapper in self._available_mapper_types:
mapper_types.append(mapper)
self._mapper_types = mapper_types
def _setup_current_range(self):
mm = self.module_manager
# Set the default name and range for our lut.
lm = self.lut_manager
slm = mm.scalar_lut_manager
lm.trait_set(default_data_name=slm.default_data_name,
default_data_range=slm.default_data_range)
# Set the current range.
dataset = mm.source.get_output_dataset()
dsh = DataSetHelper(dataset)
point_name, point_rng = dsh.get_range('scalars', 'point')
cell_name, cell_rng = dsh.get_range('scalars', 'cell')
if point_name is None and cell_name is None:
error('No scalars in input data!')
rng = (0, 255)
elif point_name is not None:
rng = point_rng
else:
rng = cell_rng
if self.current_range != rng:
self.current_range = rng
def _get_volume_mapper(self):
return self._volume_mapper
def _get_volume_property(self):
return self._volume_property
def _get_ray_cast_function(self):
return self._ray_cast_function
def _get_mapper(self, klass):
""" Return a mapper of the given class. Either from the cache or by
making a new one.
"""
result = self._mapper_cache.get(klass)
if result is None:
result = klass()
self._mapper_cache[klass] = result
return result
def _volume_mapper_type_changed(self, value):
mm = self.module_manager
if mm is None:
return
old_vm = self._volume_mapper
if old_vm is not None:
old_vm.on_trait_change(self.render, remove=True)
try:
old_vm.remove_all_input_connections(0)
except AttributeError:
pass
if value == 'RayCastMapper':
new_vm = self._get_mapper(tvtk.VolumeRayCastMapper)
self._volume_mapper = new_vm
self._ray_cast_functions = ['RayCastCompositeFunction',
'RayCastMIPFunction',
'RayCastIsosurfaceFunction']
new_vm.volume_ray_cast_function = self._get_mapper(
tvtk.VolumeRayCastCompositeFunction
)
elif value == 'MultiBlockVolumeMapper':
new_vm = self._get_mapper(tvtk.MultiBlockVolumeMapper)
self._volume_mapper = new_vm
self._ray_cast_functions = ['']
elif value == 'AMRVolumeMapper':
new_vm = self._get_mapper(tvtk.AMRVolumeMapper)
self._volume_mapper = new_vm
self._ray_cast_functions = ['']
elif value == 'SmartVolumeMapper':
new_vm = self._get_mapper(tvtk.SmartVolumeMapper)
self._volume_mapper = new_vm
self._ray_cast_functions = ['']
elif value == 'GPUVolumeRayCastMapper':
new_vm = self._get_mapper(tvtk.GPUVolumeRayCastMapper)
self._volume_mapper = new_vm
self._ray_cast_functions = ['']
elif value == 'OpenGLGPUVolumeRayCastMapper':
new_vm = self._get_mapper(tvtk.OpenGLGPUVolumeRayCastMapper)
self._volume_mapper = new_vm
self._ray_cast_functions = ['']
elif value == 'TextureMapper2D':
new_vm = self._get_mapper(tvtk.VolumeTextureMapper2D)
self._volume_mapper = new_vm
self._ray_cast_functions = ['']
elif value == 'TextureMapper3D':
new_vm = self._get_mapper(tvtk.VolumeTextureMapper3D)
self._volume_mapper = new_vm
self._ray_cast_functions = ['']
elif value == 'VolumeProMapper':
new_vm = self._get_mapper(tvtk.VolumeProMapper)
self._volume_mapper = new_vm
self._ray_cast_functions = ['']
elif value == 'FixedPointVolumeRayCastMapper':
new_vm = self._get_mapper(tvtk.FixedPointVolumeRayCastMapper)
self._volume_mapper = new_vm
self._ray_cast_functions = ['']
elif value == 'UnstructuredGridVolumeRayCastMapper':
new_vm = self._get_mapper(tvtk.UnstructuredGridVolumeRayCastMapper)
self._volume_mapper = new_vm
self._ray_cast_functions = ['']
elif value == 'UnstructuredGridVolumeZSweepMapper':
new_vm = self._get_mapper(tvtk.UnstructuredGridVolumeZSweepMapper)
self._volume_mapper = new_vm
self._ray_cast_functions = ['']
src = mm.source
self.configure_input(new_vm, src.outputs[0])
self.volume.mapper = new_vm
new_vm.on_trait_change(self.render)
def _update_ctf_fired(self):
set_lut(self.lut_manager.lut, self._volume_property)
self.render()
def _current_range_changed(self, old, new):
rescale_ctfs(self._volume_property, new)
self.render()
def _ray_cast_function_type_changed(self, old, new):
rcf = self.ray_cast_function
if len(old) > 0:
rcf.on_trait_change(self.render, remove=True)
if len(new) > 0:
new_rcf = getattr(tvtk, 'Volume%s' % new)()
new_rcf.on_trait_change(self.render)
self._volume_mapper.volume_ray_cast_function = new_rcf
self._ray_cast_function = new_rcf
else:
self._ray_cast_function = None
self.render()
def _scene_changed(self, old, new):
super(Volume, self)._scene_changed(old, new)
self.lut_manager.scene = new
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