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"""Functionality to display Mayavi scenes inside Jupyter notebooks.
"""
import base64
from itertools import count
from tvtk.api import tvtk
from tvtk.common import configure_input
from mayavi.core.scene import Scene
_registry = dict()
_backend = None
_counter = count()
def register_backend(name, klass):
global _registry
_registry[name] = klass
def _ipython_display_(self):
'''Method attached to Mayavi objects.
Note that here `self` is the Mayavi object that is going to be
visualized. This method is used by IPython to display objects on a
notebook, see here:
https://ipython.readthedocs.io/en/stable/config/integrating.html#custom-methods
'''
return _backend.display(self)
def init(backend='ipy', width=None, height=None, local=True):
"""Initialize a suitable backend for Jupyter notebooks.
**Parameters**
backend :str: one of ('itk', 'ipy', 'x3d', 'png')
width :int: suggested default width of the element
height :int: suggested default height of the element
local :bool: Use local copy of x3dom.js instead of online version.
"""
from mayavi.core.base import Base
from tvtk.pyface.tvtk_scene import TVTKScene
global _backend, _registry
backends = _registry.keys()
error_msg = "Backend must be one of %r, got %s" % (backends, backend)
assert backend in backends, error_msg
from mayavi import mlab
mlab.options.offscreen = True
_backend = _registry[backend](width, height, local)
Base._ipython_display_ = _ipython_display_
TVTKScene._ipython_display_ = _ipython_display_
print("Notebook initialized with %s backend." % backend)
class JupyterBackend(object):
def __init__(self, width=None, height=None, local=True):
self._width = width
self._height = height
self._local = local
def display(self, obj):
'''Override to display with this backend.
``obj`` is a Mayavi object that is going to be visualized.
'''
raise NotImplementedError()
def get_scene(obj):
'''Walks up the object to get to the Scene.
'''
while obj is not None:
if isinstance(obj, Scene):
return obj
else:
obj = obj.parent
return None
def get_all_actors(obj):
'''Walks down a given object and finds all the actors.'''
def _get_actors(x):
return [tvtk.to_vtk(i) for i in x]
actors = []
if hasattr(obj, 'actors'):
actors.extend(_get_actors(obj.actors))
if hasattr(obj, 'actor'):
actors.extend(_get_actors(obj.actor.actors))
if hasattr(obj, 'children'):
for x in obj.children:
actors.extend(get_all_actors(x))
return actors
class ITKBackend(JupyterBackend):
_view = None
def __init__(self, width=None, height=None, local=True):
super().__init__(width, height, local)
from mayavi import mlab
mlab.options.backend = 'test'
if self.__class__._view is None:
try:
from itkwidgets import view
self.__class__._view = view
self._workaround_itkwidgets_bug()
except ImportError:
print("The itk backend requires itkwidgets to be installed.")
def _workaround_itkwidgets_bug(self):
# Can also be removed when the PR below is merged and released.
from itkwidgets import widget_viewer
if hasattr(widget_viewer, 'have_mayavi'):
widget_viewer.have_mayavi = False
def _update_pipeline(self, actors):
for a in actors:
m = a.GetMapper()
if m:
m.Update()
def display(self, obj):
from IPython.display import display as idisplay
scene = get_scene(obj)
if scene is not None:
actors = get_all_actors(scene)
self._update_pipeline(actors)
# Works around bug in released itkwidgets-0.32.1.
# Can remove when this PR is merged and in a release:
# https://github.com/InsightSoftwareConsortium/itkwidgets/pull/438
kw = dict(
actors=actors, geometries=[], geometry_colors=[],
geometry_opacities=[], point_sets=[], point_set_colors=[],
point_set_opacities=[]
)
return idisplay(self._view(**kw))
else:
return obj
class IPyBackend(JupyterBackend):
_widget_manager = None
def __init__(self, width=None, height=None, local=True):
super().__init__(width, height, local)
if self.__class__._widget_manager is None:
# This is a singleton, no need to create multiple of these.
from mayavi.tools.remote.ipy_remote import WidgetManager
self.__class__._widget_manager = WidgetManager()
def display(self, obj):
from IPython.display import display as idisplay
if hasattr(obj, 'render_window'):
scene = obj
elif hasattr(obj, 'scene'):
scene = obj.scene
return idisplay(self._widget_manager.scene_to_ipy(scene))
class PNGBackend(JupyterBackend):
def display(self, obj):
from IPython.display import HTML
from IPython.display import display as idisplay
if hasattr(obj, 'render_window'):
scene = obj
elif hasattr(obj, 'scene'):
scene = obj.scene
return idisplay(HTML(self.scene_to_png(scene)))
def scene_to_png(self, scene):
w2if = tvtk.WindowToImageFilter()
w2if.input = scene.render_window
ex = tvtk.PNGWriter()
ex.write_to_memory = True
configure_input(ex, w2if)
ex.update()
ex.write()
data = base64.b64encode(ex.result.to_array()).decode('ascii')
html = '<img src="data:image/png;base64,%s" alt="PNG image"></img>'
return html % data
class X3DBackend(JupyterBackend):
def display(self, obj):
from IPython.display import HTML
from IPython.display import display as idisplay
if hasattr(obj, 'render_window'):
scene = obj
elif hasattr(obj, 'scene'):
scene = obj.scene
return idisplay(HTML(self.scene_to_x3d(scene)))
def _fix_x3d_header(self, x3d):
id = 'scene_%d' % next(_counter)
rep = '<X3D profile="Immersive" version="3.0" id="%s" ' % id
if self._width is not None:
rep += 'width="%dpx" ' % self._width
if self._height is not None:
rep += 'height="%dpx" ' % self._height
rep += '>'
if isinstance(x3d, bytes):
x3d = x3d.decode("utf-8", "ignore")
x3d = x3d.replace(
'<X3D profile="Immersive" version="3.0">',
rep
)
return x3d
def scene_to_x3d(self, scene):
ex = tvtk.X3DExporter()
ex.input = scene.render_window
lm = scene.light_manager.light_mode
# The default raymond mode is too bright so switch back to vtk mode.
scene.light_manager.light_mode = 'vtk'
ex.write_to_output_string = True
ex.update()
ex.write()
# Switch back
scene.light_manager.light_mode = lm
if self._local:
url_base = "nbextensions/mayavi/x3d"
else:
url_base = "https://www.x3dom.org/download/1.7.2"
x3d_elem = self._fix_x3d_header(ex.output_string)
html = '''
%s
<script type="text/javascript">
require(["%s/x3dom"], function(x3dom) {
var x3dom_css = document.getElementById("x3dom-css");
if (x3dom_css === null) {
var l = document.createElement("link");
l.setAttribute("rel", "stylesheet");
l.setAttribute("type", "text/css");
l.setAttribute("href", require.toUrl("%s/x3dom.css"));
l.setAttribute("id", "x3dom-css");
$("head").append(l);
}
if (typeof x3dom != 'undefined') {
x3dom.reload();
}
else if (typeof window.x3dom != 'undefined') {
window.x3dom.reload();
}
})
</script>
''' % (x3d_elem, url_base, url_base)
return html
register_backend('itk', ITKBackend)
register_backend('ipy', IPyBackend)
register_backend('x3d', X3DBackend)
register_backend('png', PNGBackend)
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