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Source: mcaller
Section: science
Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>
Build-Depends: debhelper-compat (= 13),
dh-python,
python3-all,
python3-setuptools,
python3-seaborn,
python3-biopython,
python3-numpy,
python3-sklearn
Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/mcaller
Vcs-Git: https://salsa.debian.org/med-team/mcaller.git
Homepage: https://github.com/al-mcintyre/mCaller
Testsuite: autopkgtest-pkg-python
Rules-Requires-Root: no
Package: mcaller
Architecture: all
Depends: python3,
${python3:Depends},
${misc:Depends},
python3-sklearn,
python3-h5py,
python3-biopython,
python3-matplotlib,
python3-seaborn,
python3-numpy,
python3-pysam,
python3-scipy,
python3-pandas
Recommends:
nanopolish|poretools
Suggests:
graphmap,
bwa
Description: find methylation in nanopore reads
H
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H-C-aller
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H
.
This program is designed to call m6A from nanopore data using the
differences between measured and expected currents.
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