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#!/usr/bin/env python3
# -*- coding: utf-8 -*-
'''
SasView_generator.py analyzes C-files prefixed "sas_" in the specified directory.
It the C-files contain valid sasmodels, it generates a file bassed on these - "sasview_proxy.c".
This file is written to the same directory as the C-files (and thus may overwrite any previous version of the file).
It also generates rudimentary, but necessary, documentation and inserts it into the mcstas component.
The modified component template (suffix .Template) is output as a new file. The input component template must contain
MCDOC and MCDOC_END flags in the header.
The new component file has the same base name, except that the .Template suffix is removed.
'''
import os
import logging
import re
import argparse
class SasViewModelFileInfo():
'''
Takes a sas_<modelname>.c file and parses include, function call and doc hint (non-q model parameter names).
Construct and then use the objects string properties to construct the desired C code or docs.
'''
def __init__(self, model_file_fulpath, pars_array_name):
# check input
# TODO: implement: throw exception on fail (user should use try-catch)
# generate static info
self.input_str = model_file_fulpath
self.text = open(model_file_fulpath).read()
self.pars_array_name = pars_array_name
self.model_name = re.search(r'sas_(.*).c', os.path.basename(model_file_fulpath)).group(1)
self.model_name_xy = self.model_name + '_xy'
self.percent_include = '%%include "%s"' % os.path.basename(model_file_fulpath)
self.hash_include = '#include <%s>' % os.path.basename(model_file_fulpath)
self.sign_non_q = self.__getSignNonQ(self.text, False)
self.sign_xy_non_q = self.__getSignNonQ(self.text, True)
self.sign_form_vol = self.__getFormVolumeSign(self.text)
self.__num_model_pars = self.__getNumPars(self.sign_non_q)
self.__num_model_pars_xy = self.__getNumPars(self.sign_xy_non_q)
self.__num_form_vol_pars = self.__getNumPars(self.sign_form_vol)
self.Iq_hint = self.__getHint(self.sign_non_q)
self.Iq_xy_hint = self.__getHint(self.sign_xy_non_q)
self.form_volume_hint = self.__getHint(self.sign_form_vol)
self.Iq_call = self.__getIqCall(pars_array_name, self.__num_model_pars, xy=False)
self.Iqxy_call = self.__getIqCall(pars_array_name, self.__num_model_pars_xy, xy=True)
self.form_volume_call = self.__getFormVolCall(pars_array_name, self.__num_form_vol_pars, self.sign_non_q, self.sign_form_vol)
def printMe(self):
text = 'input: %s\ntext: %s\npars_name: %s\nmodel_name: %s\n%s\n%s\nsign_non_q: %s\nsign_xy_non_q: %s\nsign_form_vol: %s\nIq_hint: %s\nIq_xy_hint: %s\nIq_call: %s\nIqxy_call: %s\nform_volume_call: %s\n' % (
self.input_str, '(not shown)', self.pars_array_name,
self.model_name, self.percent_include, self.hash_include,
self.sign_non_q, self.sign_xy_non_q, self.sign_form_vol,
self.Iq_hint, self.Iq_xy_hint,
self.Iq_call, self.Iqxy_call, self.form_volume_call)
return '#####\n' + text + '#####\n'
@staticmethod
def __getNumPars(sign):
c = 1
for comma in re.finditer(',', sign):
c += 1
return c
@staticmethod
def __getSignNonQ(text, xy=False):
# get all cases covered
define_str = r'#define\s+IQ_PARAMETER_DECLARATIONS\s+([\w\s,]*\n)'
if xy:
define_str = r'#define\s+IQXY_PARAMETER_DECLARATIONS\s+([\w\s,]*)\n'
sign_str = r'float\s+Iq\(\s*float\s+q\s*,([\w\s,]*)\)'
sign_str_2 = r'float\s+Iq\(\s*float\s+qval\s*,([\w\s,]*)\)'
sign_str_3 = r'float\s+Iq\(\s*float\s+QQ\s*,([\w\s,]*)\)'
if xy:
sign_str = r'float\s+Iqxy\(\s*float\s+qx\s*,\s*float\s+qy\s*,([\w\s,]*)\)'
# LOOK UP IN FILES:
sign_str_2 = r'float\s+Iqxy\(\s*float\s+qx\s*,\s*float\s+qy\s*,([\w\s,]*)\)'
sign_str_3 = r'float\s+Iqxy\(\s*float\s+qx\s*,\s*float\s+qy\s*,([\w\s,]*)\)'
# logics to extract signature
m = re.search(define_str, text)
if m:
# entire non-q sign is contained in the define
sign = re.sub('\s+', ' ', m.group(1))
sign = sign.strip(' ')
return sign
else:
# entire sign is contained in the function declaration
m = re.search(sign_str, text)
if not m:
m = re.search(sign_str_2, text)
if not m:
m = re.search(sign_str_3, text)
if m:
sign = re.sub('\s+', ' ', m.group(1))
sign = sign.strip(' ')
return sign
else:
raise Exception('no "float Iq(...)" or "float Iqxy(...)" function signature found')
@staticmethod
def __getFormVolumeSign(text):
# get all cases covered
define_str_ver1 = r'#define\s+VOLUME_PARAMETER_DECLARATIONS\s+([\w\s,]*\n)'
define_str_ver2 = r'#define\s+VOLUME_PARAMETERS\s+([\w\s,]*\n)'
sign_str = r'float\s+form_volume\(([\w\s,]*)\)'
sign_str_2 = r'float\s+form_volume\(([\w\s,]*)\)'
# NOTE: sometimes VOLUME_PARAMETER_DECLARATIONS turns out "void"
# logics to extract signature
m = re.search(define_str_ver1, text)
if m:
# entire non-q sign is contained in the define
sign = re.sub('\s+', ' ', m.group(1))
sign = sign.strip(' ')
return sign
else:
# entire sign is contained in the function declaration
m = re.search(sign_str, text)
if not m:
m = re.search(sign_str_2, text)
if m:
sign = re.sub('\s+', ' ', m.group(1))
sign = sign.strip(' ')
return sign
else:
return ''
#raise Exception('float "form_volume(...)" function signature found')
@staticmethod
def __getHint(sign):
sign = re.sub('float', '', sign)
sign = re.sub('\s+', ' ', sign)
return '(' + sign.strip(' ') + ')'
@staticmethod
def __getIqCall(pars_array_name, numpars, xy=False):
# Iq(...) function begins with "float q" and Iqxy begins with "float qx, float qy"
sign = 'q'
if xy:
sign = 'qx, qy'
for i in range(numpars):
sign += ', %s[%i]' % (pars_array_name, i)
if xy:
return 'Iqxy(%s)' % sign
return 'Iq(%s)' % sign
@staticmethod
def __getFormVolCall(pars_array_name, num_form_vol_pars, real_iq_sign, form_vol_sign):
# special case: form_volume signature is "void"
if re.search('void', form_vol_sign):
return 'form_volume()'
# assemble form_volume call string as we go
call_str = 'form_volume('
# remove excess whitespace and "float"
real_iq_sign = SasViewModelFileInfo.__getHint(real_iq_sign)
form_vol_sign = SasViewModelFileInfo.__getHint(form_vol_sign)
pars_iq = []
m = re.finditer('(\w*)[,)]', real_iq_sign)
for par in m:
pars_iq.append(par.group(1))
pars_fv = []
m = re.finditer('(\w*)[,)]', form_vol_sign)
for par in m:
pars_fv.append(par.group(1))
right_par_idcs = []
for i in range(len(pars_fv)):
for j in range(len(pars_iq)):
if re.match(pars_fv[i], pars_iq[j]) and re.match(pars_iq[j], pars_fv[i]):
right_par_idcs.append(j)
# error case: no match found for this form_volume parameter - exit (function returns unity)
if len(right_par_idcs) == i:
return '1'
i += 1
for idx in range(len(pars_fv)):
call_str = call_str + 'pars[%d]' % right_par_idcs[idx]
if idx != len(pars_fv)-1:
call_str = call_str + ', '
else:
call_str = call_str + ')'
return call_str
def getFiles(look_dir, extension):
file_list = []
for (dirpath, dirnames, filenames) in os.walk(look_dir):
for f in filenames:
if os.path.splitext(f)[1] == '.' + extension:
if re.match(r'sas_', os.path.basename(f)):
file_list.append(os.path.abspath(os.path.join(dirpath,f)))
break
return sorted(file_list, key=lambda item: (int(item.lower().partition(' ')[0])
if item.lower()[0].isdigit() else float('inf'), item.lower()))
def mod_comp_file_docs(comp_file, docs_section):
text = open(comp_file).read()
pos_D = text.find("MDOC")
pos_end_D = text.find('MDOC_END')
if pos_D == -1 or pos_end_D == -1:
logging.exception('MDOC or MDOC_END flag error. positions: %d, %d' % (pos_D, pos_end_D))
return text[:pos_D+4] + '\n' + docs_section + text[pos_end_D-2:]
def get_formatted_docs_text(info_lst, left_padding = 4, log_num_models = 2):
# padding (asterisk-plus-whitespace indentation)
pad_format_str = '{:<' + str(left_padding) + '}' # e.g. '{:<16}'
# width of index count (1's 10's or 100's?)
index_format_str = '{:>' + str(log_num_models) + '}' # e.g. '{:>2}'
# width of model name
max_len = 0
for info in info_lst:
if len(info.model_name) > max_len:
max_len = len(info.model_name)
if len(info.model_name_xy) > max_len:
max_len = len(info.model_name_xy)
name_format_str = '{:<' + str(max_len + 1) + '}' # e.g. '{:<35}'
# make and return the doc lines
text = pad_format_str.format('* ')
text += '\n* <table border=1><tr><td><b>Model no.</b></td><td><b>Model name</b></td><td><b>Parameters</b></td></tr>\n* <tr><td>' + index_format_str.format(str(0)) + '</td><td>None</td><td>None</td></tr>\n'
i = 1
for info in info_lst:
text += pad_format_str.format('* <tr><td>')
text += index_format_str.format(str(i)) + '</td><td>' + '<a href="http://www.sasview.org/sasview/user/models/model_functions.html#'+ name_format_str.format(info.model_name).replace(" ", "").replace("_", "") + 'model">' + name_format_str.format(info.model_name).replace(" ", "") + '</a></td><td>' + info.Iq_hint + '</td></tr>\n'
i += 1
text += pad_format_str.format('* <tr><td>')
text += index_format_str.format(str(i)) + '</td><td>' + '<a href="http://www.sasview.org/sasview/user/models/model_functions.html#'+ name_format_str.format(info.model_name_xy).replace(" ", "").replace(" ", "").replace("_xy", "") + 'model">' + name_format_str.format(info.model_name_xy).replace(" ", "") + '</a></td><td>' + info.Iq_xy_hint + '</td></tr>\n'
i += 1
text += '* </table>\n'
# Include sasmodel parameter descriptions - exclude html header etc.
sasdoc = open( os.path.join(args.cdir[0], "docs_sasmodels.html") )
html_list = ['<!DOCTYPE html>','<html>','<body>', '</body>','</html>']
for line in iter(sasdoc):
if line not in html_list:
text += "* " + line
return text
def get_proxy_file_text(info_lst):
include_section = ''
i = 1
for info in info_lst:
include_section += ' #if model_index == %d\n' % i
include_section += ' %s\n' % info.percent_include
include_section += ' #endif\n'
i += 1
include_section += ' #if model_index == %d\n' % i
include_section += ' %s\n' % info.percent_include
include_section += ' #endif\n'
i += 1
# Iq interface
Iq_call_section = ' float getIq(float q, float qx, float qy, float pars[])\n'
Iq_call_section += ' {\n'
Iq_call_section += ' float Iq_out = 1;\n'
i = 1
for info in info_lst:
Iq_call_section += ' #if model_index == %d\n' % i
Iq_call_section += ' Iq_out = %s;\n' % info.Iq_call
Iq_call_section += ' #endif\n'
i+=1
Iq_call_section += ' #if model_index == %d\n' % i
Iq_call_section += ' Iq_out = %s;\n' % info.Iqxy_call
Iq_call_section += ' #endif\n'
i+=1
Iq_call_section += ' return Iq_out;\n'
Iq_call_section += ' }\n'
# form_volume interface
form_vol_call_section = ' float getFormVol(float pars[])\n'
form_vol_call_section += ' {\n'
form_vol_call_section += ' float form_vol;\n'
i = 1
for info in info_lst:
form_vol_call_section += ' #if model_index == %d\n' % i
form_vol_call_section += ' form_vol = %s;\n' % info.form_volume_call
form_vol_call_section += ' #endif\n'
i+=1
form_vol_call_section += ' #if model_index == %d\n' % i
form_vol_call_section += ' form_vol = %s;\n' % info.form_volume_call
form_vol_call_section += ' #endif\n'
i+=1
form_vol_call_section += ' return form_vol;\n'
form_vol_call_section += ' }\n'
return include_section + '\n' + Iq_call_section + '\n' + form_vol_call_section
def main(args):
logging.basicConfig(level=logging.INFO)
logging.info('input comp file: %s', args.compfile[0])
logging.info('model source dir: %s', args.cdir[0])
# get model file info
info_lst = []
for f in getFiles(args.cdir[0].rstrip('/'), "c") :
logging.info('integrating: %s', f)
info_lst.append(SasViewModelFileInfo(f, 'pars'))
# enable to print debug info
if False:
text = ''
for info in info_lst:
text = text + info.printMe()
print(info.printMe())
for info in info_lst:
print(info.sign_form_vol)
debug_file = os.path.splitext(os.path.basename(args.compfile[0]))[0] + '_modelinfo.txt'
logging.info('output comp file: %s' % debug_file)
f = open(debug_file, 'w')
f.write(text)
f.close()
exit()
# assemble proxy file
# save proxy file
f = open(os.path.join(os.path.abspath(args.cdir[0]), 'sasview_proxy.c'), 'w')
f.write(get_proxy_file_text(info_lst))
f.close()
# get docs section for .comp file
docs_section_text = get_formatted_docs_text(info_lst)
# mod .comp file
f = open(os.path.splitext(os.path.basename(args.compfile[0]))[0] , 'w')
f.write(mod_comp_file_docs(args.compfile[0], docs_section_text))
f.close()
if __name__ == '__main__':
parser = argparse.ArgumentParser(description=__doc__)
parser.add_argument('compfile', nargs=1, help='the SasView model component')
parser.add_argument('cdir', nargs=1, help='directory containing sasmodel C-files, prefixed by "sas_"')
args = parser.parse_args()
main(args)
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