File: mcplotloader.py

package info (click to toggle)
mccode 3.5.19%2Bds5-2
  • links: PTS, VCS
  • area: main
  • in suites: sid, trixie
  • size: 1,113,256 kB
  • sloc: ansic: 40,697; python: 25,137; yacc: 8,438; sh: 5,405; javascript: 4,596; lex: 1,632; cpp: 742; perl: 296; lisp: 273; makefile: 226; fortran: 132
file content (897 lines) | stat: -rw-r--r-- 29,586 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
'''
functionality for loading mccode data into suitable data types,
and assembling it in a plot-friendly way.
'''
import glob
import re
import os
from os.path import isfile, isdir, join, dirname, basename, splitext, exists
from os import walk
from decimal import Decimal

from .flowchart import FCNDecisionBool, FCNDecisionMulti, FCNProcess, FCNTerminal, FlowChartControl
from .plotgraph import PlotGraphPrint, DataHandle, PNMultiple, PNSingle


'''
McCode simulation output data types.
'''
class DataMcCode(object):
    ''' base type holding only the data object's title '''
    def __init__(self, *args, **kwargs):
        self.title = ''
        self.filepath = ''

    def __str__(self, *args, **kwargs):
        return self.title


class Data0D(DataMcCode):
    # Bring back empty 'component' field, courtesy
    # of the scan plotter (otherwise we fail abrubtly)
    DataMcCode.component=''
    pass


class Data1D(DataMcCode):
    ''' 1d plots use this data type '''
    def __init__(self):
        super(Data1D, self).__init__()

        self.component = ''
        self.filename = ''
        self.title = ''
        self.xlabel = ''
        self.ylabel = ''

        self.xvar = ''
        self.xlimits = () # pair

        self.variables = []

        self.yvar = () # pair
        self.values = () # triplet
        self.statistics = ''

        # data references
        self.xvals = []
        self.yvals = []
        self.y_err_vals = []
        self.Nvals = []


    def clone(self):
        data = Data1D()

        data.filepath = self.filepath

        data.component = self.component
        data.filename = self.filename
        data.title = self.title
        data.xlabel = self.xlabel
        data.ylabel = self.ylabel

        data.xvar = self.xvar
        data.xlimits = self.xlimits

        data.variables = self.variables

        data.yvar = self.yvar
        data.values = self.values
        data.statistics = self.statistics

        # data references
        data.xvals = self.xvals
        data.yvals = self.yvals
        data.y_err_vals = self.y_err_vals
        data.Nvals = self.Nvals

        return data


    def get_stats_title(self):
        '''I=.... Err=... N=...; X0=...; dX=...;'''
        try:
            stitle = '%s=%e Err=%e N=%d; %s' % (
                self.yvar[0], self.values[0], self.values[1],
                self.values[2], self.statistics)
        except:
            stitle = '%s of %s' % (self.yvar[0], self.xvar)
        return stitle


    def __str__(self):
        return 'Data1D, ' + self.get_stats_title()


class Data2D(DataMcCode):
    ''' PSD data type '''
    def __init__(self):
        super(Data2D, self).__init__()

        self.component = ''
        self.filename = ''
        self.title = ''

        self.xlabel = ''
        self.ylabel = ''

        self.xvar = ''
        self.yvar = ''
        self.zvar = ''
        self.xylimits = () # quadruple

        self.values = () # triplet
        self.statistics = '' # quadruple
        self.signal = ''

        # data references
        self.zvals = []
        self.counts = []


    def get_stats_title(self):
        '''I=.... Err=... N=...; X0=...; dX=...;'''
        stitle = '%s=%e Err=%e N=%d' % (
            self.zvar, self.values[0], self.values[1], self.values[2])
        return stitle


    def __str__(self):
        return 'Data2D, ' + self.get_stats_title()


''' 
Utility funcitons for loading and parsing mccode output files
'''
freetext_pat = '.+'

def _parse_1D_monitor(text):
    ''' populates data fields of new Data1D object using the text from a mccode data file '''
    data = Data1D()

    try:
        # load essential header data
        '''# component: Ldetector'''
        m = re.search(r'\# component: ([\w\.]+)', text)
        data.component = m.group(1)
        '''# filename: Edet.dat'''
        m = re.search(r'\# filename: ([\-\+\w\.\,]+)', text)
        data.filename = m.group(1)
        '''# title: Wavelength monitor'''
        m = re.search(r'\# title: (%s)' % freetext_pat, text)
        data.title = m.group(1)
        '''# xlabel: Wavelength [AA]'''
        m = re.search(r'\# xlabel: (%s)' % freetext_pat, text)
        data.xlabel = m.group(1)
        '''# ylabel: Intensity'''
        m = re.search(r'\# ylabel: (%s)' % freetext_pat, text)
        data.ylabel = m.group(1)

        '''# xvar: L'''
        m = re.search(r'\# xvar: ([\w]+)', text)
        data.xvar = m.group(1)
        '''# xlimits: 5.5 6.5'''
        m = re.search(r'\# xlimits: ([\d\.\-\+e]+) ([\d\.\-\+e]+)', text)
        data.xlimits = (float(m.group(1)), float(m.group(2)))

        '''# yvar: (I,I_err)'''
        m = re.search(r'\# yvar: \(([\w]+),([\w]+)\)', text)
        data.yvar = (m.group(1), m.group(2))

        '''# values: 6.72365e-17 4.07766e-18 4750'''
        m = re.search(r'\# values: ([\d\-\+\.e]+) ([\d\-\+\.e]+) ([\d\-\+\.e]+)', text)
        data.values = (Decimal(m.group(1)), Decimal(m.group(2)), float(m.group(3)))
        '''# statistics: X0=5.99569; dX=0.0266368;'''
        m = re.search(r'\# statistics: X0=([\d\.\-\+e]+); dX=([\d\.\-\+e]+);', text)
        data.statistics = 'X0=%.2E; dX=%.2E;' % (Decimal(m.group(1)), Decimal(m.group(2)))

        # load the actual data
        lines = text.splitlines()
        xvals = []
        yvals = []
        y_err_vals = []
        Nvals = []
        for l in lines:
            if '#' in l:
                continue

            vals = l.split()
            xvals.append(float(vals[0]))
            yvals.append(float(vals[1]))
            y_err_vals.append(float(vals[2]))
            Nvals.append(float(vals[3]))

        data.xvals = xvals
        data.yvals = yvals
        data.y_err_vals = y_err_vals
        data.Nvals = Nvals

    except Exception as e:
        print('Data1D load error.')
        raise e

    return data


def _parse_2D_monitor(text):
    data = Data2D()

    ''' populates data fields using the text from a mccode data file '''
    try:
        # load essential header data
        '''# component: detector'''
        m = re.search(r'\# component: ([\w]+)', text)
        if m:
            data.component = m.group(1)
        else:
            data.component = "(no comp name)"
        '''# filename: PSD.dat'''
        m = re.search(r'\# filename: ([\-\+\w\.\,]+)', text)
        data.filename = m.group(1)
        '''# title: PSD monitor'''
        m = re.search(r'\# title: (%s)' % freetext_pat, text)
        data.title = m.group(1)

        '''# xlabel: X position [cm]'''
        m = re.search(r'\# xlabel: (%s)' % freetext_pat, text)
        data.xlabel = m.group(1)
        '''# ylabel: Y position [cm]'''
        m = re.search(r'\# ylabel: (%s)' % freetext_pat, text)
        data.ylabel = m.group(1)

        '''# xvar: X'''
        m = re.search(r'\# xvar: (%s)' % freetext_pat, text)
        data.xvar = m.group(1)
        '''# yvar: Y '''
        m = re.search(r'\# yvar: (%s)' % freetext_pat, text)
        data.yvar = m.group(1)

        '''# zvar: I '''
        m = re.search(r'\# zvar: (%s)' % freetext_pat, text)
        data.zvar = m.group(1)
        '''
        # xylimits: -30 30 -30 30
        # xylimits: 0 5e+06 0.5 100
        '''
        m = re.search(r'\# xylimits: ([\d\.\-\+e]+) ([\d\.\-\+e]+) ([\d\.\-\+e]+) ([\d\.\-\+e]+)([\ \d\.\-\+e]*)', text)
        data.xlimits = (float(m.group(1)), float(m.group(2)), float(m.group(3)), float(m.group(4)))

        '''# values: 6.72365e-17 4.07766e-18 4750'''
        m = re.search(r'\# values: ([\d\+\-\.e]+) ([\d\+\-\.e]+) ([\d\+\-\.e]+)', text)
        data.values = (Decimal(m.group(1)), Decimal(m.group(2)), float(m.group(3)))
        '''# statistics: X0=5.99569; dX=0.0266368;'''
        m = re.search(r'\# statistics: X0=([\d\.\+\-e]+); dX=([\d\.\+\-e]+); Y0=([\d\.\+\-e]+); dY=([\d\.\+\-e]+);', text)

        data.statistics = 'X0=%.2E; dX=%.2E; Y0=%.2E; dY=%.2E;' % (Decimal(m.group(1)), Decimal(m.group(2)), Decimal(m.group(3)), Decimal(m.group(4)))
        '''# signal: Min=0; Max=1.20439e-18; Mean=4.10394e-21;'''
        m = re.search(r'\# signal: Min=([\ \d\.\+\-e]+); Max=([\ \d\.\+\-e]+); Mean=([\ \d\.\+\-e]+);', text)
        data.signal = 'Min=%f; Max=%f; Mean=%f;' % (float(m.group(1)), float(m.group(2)), float(m.group(3)))

        '''# Data [detector/PSD.dat] I:'''
        '''# Events [detector/PSD.dat] N:'''
        lines = text.splitlines()
        dat = True
        events = False
        for l in lines:
            if '# Data ' in l:
                dat = True
                continue

            if '# Events ' in l:
                dat = False
                events = True
                continue

            if '# Errors ' in l:
                # NOTE: error values are not loaded
                dat = False
                events = False
                continue

            if dat:
                try:
                    vals = [float(item) for item in l.strip().split()]
                    data.zvals.append(vals)
                except:
                    pass

            if events:
                try:
                    vals = [float(item) for item in l.strip().split()]
                    data.counts.append(vals)
                except:
                    pass

    except Exception as e:
        print('Data2D load error.')
        raise e

    return data


def _load_monitor(monitorfile):
    ''' deferred loading: returns a data handle, which the user must call getdata() on to load the actual data '''
    def load(monfile):
        f = monfile
        if not f == 'No file':
            text = open(f).read()
            # determine 1D / 2D data

            m = re.search(r'\# type: (\w+)', text)
            typ = m.group(1)
            if typ == 'array_0d':
                print("load_monitor: Not loading 0d dataset %s" % monitorfile)
                data = Data0D()
            elif typ == 'array_1d':
                data = _parse_1D_monitor(text)
            elif typ == 'array_2d':
                data = _parse_2D_monitor(text)
            else:
                print('load_monitor: unknown data format %s' % typ)
                data = None
            data.filepath = f
            return data
        else:
            return Data0D()
    data = DataHandle(load_fct=lambda m=monitorfile: load(monfile=m))

    return data


def _get_filenames_from_mccodesim(mccodesim):
    dir = dirname(mccodesim)

    text = open(mccodesim).read()
    data_idx = text.find('begin data')
    filenames = []
    secs = text.split('begin data')
    for sec in secs[1:]:
        m = None
        for line in sec.splitlines():
            if m == None:
                m = re.search(r'filename: ([\w\.\,_\-+]+)\s*', line)
        if m: 
            filenames.append(join(dir, m.group(1)))
        else:
            filenames.append('No file')
    return filenames


def _load_data_from_mcfiles(filenames):
    data_lst = []
    for f in filenames:
        data = _load_monitor(f)
        data_lst.append(data)
    return data_lst


def _load_multiplot_1D_lst(f_dat):
    '''
    loads the one-dimensional 'multiplot' data sets from a mccode.dat scan sweep file,
    corresponding to each monitor as a function of the sweep parameter.
    '''
    text = open(f_dat).read()
    data_handle_lst = []

    try:
        header = Data1D()
        header.component = ''
        header.filename = 'mccode.dat'

        # NOTE: title this is overwritten below to be equal to yvar
        '''# title: Scan of lambda'''
        m = re.search(r'\# title: ([\w, ]+)', text)
        header.title = m.group(1)

        '''# xlabel: 'lambda\''''
        m = re.search(r'\# xlabel: ([\w \[\]\/\^\',]+)', text)
        header.xlabel = m.group(1).strip("\'")
        '''# ylabel: 'Intensity\''''
        m = re.search(r'\# ylabel: ([\w \[\]\/\^\',]+)', text)
        header.ylabel = m.group(1).strip("\'")

        # NOTE: this only supports a single xvar
        '''# xvars: lambda'''
        m = re.search(r'\# xvars: ([\w, ]+)', text)
        header.xvar = m.group(1).replace(',', '')
        num_xvars = len(header.xvar.split())

        '''# xlimits: 6 7'''
        m = re.search(r'\# xlimits: ([\d\.\-e]+) ([\d\.\-e]+)', text)
        header.xlimits = (float(m.group(1)), float(m.group(2)))

        '''# variables: lambda Ldetector_I Ldetector_ERR PSDrad_I PSDrad_ERR PSDrad_I PSDrad_ERR detector_I detector_ERR'''
        m = re.search(r'\# variables: ([\w ]+)', text)
        variables = m.group(1).split()

        '''# yvars: (AutoTOFL0_I,AutoTOFL0_ERR) (AutoTOF0_I,AutoTOF0_ERR) (AutoL0_I,AutoL0_ERR) ...'''
        m = re.search(r'\# yvars: ([\w \(\)\,]+)', text)
        unsplit = m.group(1)
        unsplit = unsplit.replace('(', ' ')
        unsplit = unsplit.replace(')', ' ')
        unsplit = unsplit.replace(',', ' ')
        yvars = unsplit.split()

        # get x and y values (the latter is a list of a list, the infamous yvals_lst which contains yvals values, which are lists)
        lines = text.splitlines()
        xvals = []
        yvals_lst = []
        yvals_err_lst = []

        for l in lines:
            if '#' in l:
                continue
            xvals.append(float(l.split()[0]))

            for i in range(len(yvars)//2):
                yvals_lst.append([])
                yvals_err_lst.append([])
                yvals_lst[i].append(float(l.split()[2*i+num_xvars]))
                yvals_err_lst[i].append(float(l.split()[2*i+num_xvars+1]))
        header.xvals = xvals

        # create a new instance for each y variable
        for i in range(len(yvars)//2):
            data = header.clone()
            data.yvals = yvals_lst[i]
            data.yvar = yvars[2*i]
            data.title = '%s' % (data.yvar)
            data.component = data.title
            data.y_err_vals = yvals_err_lst[i]
            data_handle_lst.append(DataHandle(load_fct=None, data=data))

    except Exception as e:
        print(e.__str__())
        raise e

    return data_handle_lst


def _load_sweep_monitors(rootdir):
    '''
    loads the files of a scan sweep into plotable datastructures
    '''
    def walkfunc(arg, dirname, fnames):
        mnames = []
        dirsignature = (dirname, mnames)
        for f in fnames:
            # NOTE: this will attempt to load all files except for mccode.sim
            if f not in mnames and f != 'mccode.sim' and f != 'mcstas.sim':
                mnames.append(f)
        arg.append(dirsignature)

    # get the subdirs somehow
    subdirtuple = []
    for root, dirs, files in walk(top=rootdir):
        walkfunc(subdirtuple, root, files)
    del subdirtuple[0] # remove root dir
    subdirs = [t[0] for t in subdirtuple]
    # get the right order of subdirs by recreating them a little bit
    subdirs = [join(dirname(subdirs[i]), str(i)) for i in range(len(subdirs))] # sortalpha(subdirs)

    # get the monitor ordering right by snooping the '  filename:' labels out of the scan point file 0/mccode.sim
    def get_subdir_monitors(subdir):
        mons = []
        if exists(join(subdir, 'mccode.sim')):
            indexfile='mccode.sim'
        elif exists(join(subdir, 'mccode.sim')):
            indexfile='mcstas.sim'
        else:
            return

        # Search for filenames - but also add dummy 'No file' in case of 0D monitor - fixed here
        # instead of in mccode itself for backward compatibility - otherwise Perl code barfs
        text = open(join(subdir, indexfile)).read()
        secs = text.split('begin data')
        for sec in secs[1:]:
            m = None
            for line in sec.splitlines():
                if m == None:
                    m = re.search(r'filename: ([\w\.\,_\-+]+)\s*', line)
                    if m: 
                        mons.append(join(subdir, m.group(1)))
                        break
            if not m:
                mons.append('No file')

        return mons

    monitors_by_subdir = []
    for s in subdirs:
        monitors_by_subdir.append(get_subdir_monitors(s))

    # notice that columns and rows are swapped, so we get to use a
    # list-of-lists data structure, with rows the same monitor
    sweep_monitors = [None]*len(monitors_by_subdir[0])
    for i in range(len(monitors_by_subdir[0])):          # N
        mon_lst = [None]*len(monitors_by_subdir)
        for j in range(len(monitors_by_subdir)):
            mon_lst[j] = _load_monitor(monitors_by_subdir[j][i])
        sweep_monitors[i] = mon_lst

    return sweep_monitors


'''
Flowchart functions for decision and terminal nodes (there are no process nodes in the implemented chart, 
although a cleaner implementation might include some).

Decision (bool) functions only probe disk contents. Terminal functions will load and interprit data files.
Therefore, any load errors are encountered at the terminal nodes' load data step.

NOTE: Functions can be context-dependent, according to the corresponding node position.
The function has_filename must be called first (see test_decfuncs).
'''

def is_dat_file(f):
    if not isfile(f):
        return False
    f = open(f, 'rb')
    line = f.readline().decode()
    m = re.match(r'\# Format\: McCode with text headers', line)
    if m:
        return True
    return False


def has_filename(args):
    f = args['simfile']
    if not isfile(f):
        if not isdir(f):
            if not f == '':
                raise Exception('Invalid input file.')
            else:
                f = '.'
        args['directory'] = f
        args['simfile'] = ''
        return False
    else:
        args['directory'] = dirname(f)
        return True


def is_mccodesim_or_mccodedat(args):
    f = args['simfile']
    f_name = basename(f)
    return (f_name == 'mccode.sim' or f_name == 'mcstas.sim' or f_name == 'mccode.dat') and isfile(f)


def is_monitorfile(args):
    f = args['simfile']
    ext = splitext(f)[1]
    if isfile(f):
        args['monitorfile'] = f
        return True
    else:
        return False


def is_sweepfolder(args):
    d = args['directory']

    if not isdir(d):
        return False
    dotsim = join(d, 'mccode.sim')
    dotdat = join(d, 'mccode.dat')
    return isfile(dotsim) and isfile(dotdat)


def is_broken_sweepfolder(args):
    ''' not implemented (returns trivial answer) '''
    return False


def is_sweep_data_present(args):
    ''' not implemented '''
    raise Exception('is_sweep_data_present has not been implemented.')


def is_mccodesim_w_monitors(args):
    f = args['simfile']
    d = args['directory']
    # checks mccode.sim existence
    if isfile(join(d, 'mccode.sim')):
        indexfile='mccode.sim'
    elif isfile(join(d, 'mcstas.sim')):
        indexfile='mcstas.sim'
    else:
        return False

    f = join(d, indexfile)
    args['simfile'] = f
    
    # look for any "unkonwn" files, could be data files
    datfiles = glob.glob(join(d, '*'))
    if 'mccode.sim' in datfiles: 
        datfiles.remove('mccode.sim')
    if 'mcstas.sim' in datfiles: 
        datfiles.remove('mcstas.sim')
    if 'mccode.dat' in datfiles: 
        datfiles.remove('mccode.dat')
    return len(datfiles) > 0


def has_datfile(args):
    d = args['directory']
    
    # look for any "unkonwn" files, could be data files
    datfiles = glob.glob(join(d, '*'))
    if 'mccode.sim' in datfiles: 
        datfiles.remove('mccode.sim')
    if 'mcstas.sim' in datfiles: 
        datfiles.remove('mcstas.sim')
    if 'mccode.dat' in datfiles: 
        datfiles.remove('mccode.dat')
    if len(datfiles) > 0:
        for f in datfiles:
            if not is_dat_file(f):
                return False
        args['monitorfile'] = datfiles[0]
        return True
    else:
        return False


def has_multiple_datfiles(args):
    d = args['directory']

    # look for any "unkonwn" files, could be data files
    datfiles = glob.glob(join(d, '*'))
    if 'mccode.sim' in datfiles:
        datfiles.remove('mccode.sim')
    if 'mcstas.sim' in datfiles:
        datfiles.remove('mcstas.sim')
    if 'mccode.dat' in datfiles:
        datfiles.remove('mccode.dat')
    for f in datfiles:
        if not is_dat_file(f):
            return False
    return len(datfiles) > 1


def test_decfuncs(simfile):
    ''' calls all decision functions in the node tree '''
    args = {}
    args['simfile'] = simfile

    print('has_filename:              %s' % str(has_filename(args)))
    print('is_mccodesim_or_mccodedat: %s' % str(is_mccodesim_or_mccodedat(args)))
    print('is_monitorfile:            %s' % str(is_monitorfile(args)))
    print('is_sweepfolder:            %s' % str(is_sweepfolder(args)))
    print('is_broken_sweepfolder:     %s' % str(is_broken_sweepfolder(args)))
    #print('is_sweep_data_present:    %s' % str(is_sweep_data_present(args))) # should not be called until implemented
    print('is_mccodesim_w_monitors:   %s' % str(is_mccodesim_w_monitors(args)))
    print('has_datfile:               %s' % str(has_datfile(args)))
    print('has_multiple_datfiles:     %s' % str(has_multiple_datfiles(args)))



'''
Terminal load functions - calls data load utilities, assembles and returns data graph.
'''
def load_monitor(args):
    # assume monitorfile is present and exists
    data = _load_monitor(args['monitorfile'])

    # plot graph only has one node in this case
    root = PNSingle(data)

    return root


def load_simulation(args):
    # assume simfile is mccode.sim
    f = args['simfile']
    d = args['directory']

    # load monitor data handles
    if isfile(join(d, 'mccode.sim')):
        indexfile='mccode.sim'
    elif isfile(join(d, 'mcstas.sim')):
        indexfile='mcstas.sim'
    else:
        indexfile=''
    data_lst = _load_data_from_mcfiles(_get_filenames_from_mccodesim(join(d, indexfile)))

    # construct two-level plot graph
    root = PNMultiple(data_lst)
    primnodes = []
    for data in data_lst:
        node = PNSingle(data)
        primnodes.append(node)
    root.set_primaries(primnodes)
    root.set_secondaries(primnodes) # there is only one way to click here...could also be None

    return root


def load_sweep(args):
    d = args['directory']
    f_dat = join(d, 'mccode.dat')
    if isfile(join(d, 'mcstas.sim')):
        f_dat = join(d, 'mcstas.sim')

    # load primary data_handle, 1D sweep values
    data_handle_lst_sweep1D = _load_multiplot_1D_lst(f_dat)
    root = PNMultiple(data_handle_lst_sweep1D)

    # primary nodes (zoom on 1D sweep values)
    primnodes_lst = []
    for data_handle in data_handle_lst_sweep1D:
        primnode = PNSingle(data_handle)
        primnodes_lst.append(primnode)
    root.set_primaries(primnodes_lst)

    # load secondary data_handle, sweep data_handle points organized by monitor
    monitors = _load_sweep_monitors(d)

    # secondary modes (individual sweep monitors)
    secnodes_lst = []
    for i in range(len(monitors)):
        m_lst = monitors[i]
        secnode = PNMultiple(m_lst)
        children = []
        for m in m_lst:
            child = PNSingle(m)
            children.append(child)
        secnode.set_primaries(children)
        secnode.set_secondaries(children)
        secnodes_lst.append(secnode)
    root.set_secondaries(secnodes_lst)

    # lengths of the root, primary and secondary plot item sets
    root_len = len(data_handle_lst_sweep1D)
    prim_len = len(primnodes_lst)
    sec_len = len(secnodes_lst)

    # ensure that root, primary and secondary plot items match
    # (e.g., remove superfluous event files from secondary plot items)
    plt_idx = 0
    while plt_idx < root_len:
        if plt_idx >= len(primnodes_lst) or plt_idx >= len(secnodes_lst):
            print("Warning: Too few primary/secondary plot items.")
            break

        root_yvar = root.getdata_idx(plt_idx).yvar
        prim_yvar = primnodes_lst[plt_idx].getdata_idx(0).yvar
        sec_prims = secnodes_lst[plt_idx].get_primaries()

        # check primary plot items
        if root_yvar != prim_yvar:
            print("Warning: Root (%s) and primary (%s) plot items do not match." % (
		root_yvar, prim_yvar))

        # check secondary plot items
        remove_secnode = False
        if len(sec_prims) == 0:
            remove_secnode = True
        else:
            # check if the component name for a secondary plot item corresponds
            # to the yvar names of the root and primary plot items
            sec_yvar = sec_prims[0].getdata_idx(0).component
            if not root_yvar.startswith(sec_yvar):
                remove_secnode = True

        # remove non-matching secondary plot item
        if remove_secnode:
            secnodes_lst.pop(plt_idx)
            sec_len -= 1
            continue

        #print("Plot %d: root: %s, 1st: %s, 2nd: %s." % (plt_idx,
        #    root_yvar, prim_yvar, sec_prims[0].getdata_idx(0).filename))

        plt_idx += 1

    # remove remaining superfluous secondary plot items
    while sec_len > root_len:
        secnodes_lst.pop()
        sec_len -= 1

    # length checks
    if root_len != prim_len:
        print("Warning: Unequal number of root (%d) and primary (%d) plot items."
            % (root_len, prim_len))
    if root_len != sec_len:
        print("Warning: Unequal number of root (%d) and secondary (%d) plot items."
            % (root_len, sec_len))

    return root


def load_sweep_b(args):
    raise Exception('load_sweep_b is not implemented.')


def load_sweep_c(args):
    raise Exception('load_sweep_c is not implemented.')


def load_monitor_folder(args):
    # assume simfile is folder with multiple dat files
    d = args['directory']

    # load monitor files into a list
    datfiles = glob.glob(join(d, '*'))
    data_lst = _load_data_from_mcfiles(datfiles)

    # construct two-level plot graph
    root = PNMultiple(data_lst)
    primnodes = []
    for data in data_lst:
        node = PNSingle(data)
        primnodes.append(node)
    root.set_primaries(primnodes)
    root.set_secondaries(primnodes)

    return root


def throw_error(args):
    raise Exception('Could not load "%s".' % args['simfile'])


class McCodeDataLoader():
    ''' assembly and execution of mccode data loader flowchart '''
    def __init__(self, simfile):
        '''  '''
        self.simfile = simfile
        self.plot_graph = None

    def load(self):
        ''' loads mccode data and assembles the plotable data graph '''

        # possible exit terminals
        exit_term_error  = FCNTerminal(key = "error",  fct = throw_error)
        exit_term_case1  = FCNTerminal(key = "case1",  fct = load_monitor)
        exit_term_case2  = FCNTerminal(key = "case2",  fct = load_simulation)
        exit_term_case3  = FCNTerminal(key = "case3",  fct = load_sweep)
        exit_term_case3b = FCNTerminal(key = "case3b", fct = throw_error)
        exit_term_case3c = FCNTerminal(key = "case3c", fct = throw_error)
        exit_term_case4  = FCNTerminal(key = "case4",  fct = load_monitor_folder)

        # decision nodes (assembled in backwards order)
        dec_multiplefiles        = FCNDecisionBool(fct = has_multiple_datfiles,
                                                   node_T = exit_term_case4,
                                                   node_F = exit_term_case1)
        dec_hasdatfile           = FCNDecisionBool(fct = has_datfile,
                                                   node_T = dec_multiplefiles,
                                                   node_F = exit_term_error)
        dec_ismccodesimwmonitors = FCNDecisionBool(fct = is_mccodesim_w_monitors,
                                                   node_T = exit_term_case2,
                                                   node_F = dec_hasdatfile)
        dec_datafolderspresent   = FCNDecisionBool(fct = is_sweep_data_present,
                                                   node_T = exit_term_case3b,
                                                   node_F = exit_term_case3c)
        dec_isbrokensweep        = FCNDecisionBool(fct = is_broken_sweepfolder,
                                                   node_T = dec_datafolderspresent,
                                                   node_F = dec_ismccodesimwmonitors)
        dec_issweepfolder        = FCNDecisionBool(fct = is_sweepfolder,
                                                   node_T = exit_term_case3,
                                                   node_F = dec_isbrokensweep)
        dec_ismonitor            = FCNDecisionBool(fct = is_monitorfile,
                                                   node_T = exit_term_case1,
                                                   node_F = exit_term_error)
        dec_ismccodesimordat     = FCNDecisionBool(fct = is_mccodesim_or_mccodedat,
                                                   node_T = dec_issweepfolder,
                                                   node_F = dec_ismonitor)
        dec_hasfilename          = FCNDecisionBool(fct = has_filename,
                                                   node_T = dec_ismccodesimordat,
                                                   node_F = dec_issweepfolder)

        # enter terminal node
        enter_term_simfile = FCNTerminal(key = 'enter', node_next = dec_hasfilename)

        # get the "args" which is just the simfile, a string,
        # which may correspond to a file or a folder
        args = {}
        args['simfile'] = self.simfile

        # traverse the flow chart
        control = FlowChartControl(terminal_enter = enter_term_simfile)
        output_node = control.process(args=args)

        self.plot_graph = output_node.result

        self.directory = args['directory']