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Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Source: http://micans.org/mcl/src/
Files-Excluded: */*.1
*/doc/*.ps
*/*.html
*/Makefile.in
Upstream-Name: mcl
Files: *
Copyright: © 1999-2014 Stijn van Dongen <stijn@micans.org>
License: GPL-3+
Comment: Citation
If you use MCL software in your scientific research, please cite it
appropriately as you would cite a journal or a book. This includes papers
published in regular or electronic journals, usage of MCL as a back-end to a
database that is accessible via a web interface, or inclusion of MCL in a
larger framework of software that is distributed for other people for
scientific use. Include one of the following citations:
.
Stijn van Dongen, Graph Clustering by Flow Simulation.
PhD thesis, University of Utrecht, May 2000.
( http://www.library.uu.nl/digiarchief/dip/diss/1895620/inhoud.htm )
.
Stijn van Dongen. A cluster algorithm for graphs. Technical Report
INS-R0010, National Research Institute for Mathematics and Computer
Science in the Netherlands, Amsterdam, May 2000.
( http://www.cwi.nl/ftp/CWIreports/INS/INS-R0010.ps.Z )
.
and proper attributions to mcl's home http://micans.org/mcl/
and its author, Stijn van Dongen.
The publications listed above can be retrieved from the preceding URL.
.
If you are using some wrapper around mcl such as the blast module or the
tribe module, you are asked to act likewise.
.
For biological applications, it is appropriate to cite, additionally,
the reference article for the first application of mcl to biological data:
.
Enright A.J., Van Dongen S., Ouzounis C.A.
An efficient algorithm for large-scale detection of protein families,
Nucleic Acids Research 30(7):1575-1584 (2002).
Files: debian/*
Copyright: © 2001-2007 Joost van Baal <joostvb@debian.org>,
© 2007-2013 Philipp Benner <philipp@debian.org>,
© 2014-2017 Andreas Tille <tille@debian.org>
License: GPL-3+
Files: debian/mcxdeblast
Copyright: © 2002-2009 Stijn van Dongen,
© 2004 Jason Stajich
License: GPL-3+
License: GPL-3+
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 3 of the License, or
(at your option) any later version.
.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
.
On Debian systems you can find the full text of the GNU General Public
License version 3 at /usr/share/common-licenses/GPL-3.
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