1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185
|
# Process this file with autoconf to produce a configure script.
#
# $Id: configure.ac.in,v 1.32 2006-01-23 23:07:49 flux Exp $
AC_PREREQ(2.50)
AC_INIT(mcl, 06-058, mcl-devel@lists.micans.org)
PACKAGE=$PACKAGE_NAME
VERSION=$PACKAGE_VERSION
AC_CONFIG_AUX_DIR(autofoo)
AC_CONFIG_SRCDIR([src/shmcl/mcl.c])
AM_INIT_AUTOMAKE($PACKAGE, $VERSION)
# one day we should use a config.h.in
AC_CONFIG_HEADER(config.h)
# add a `--enable-maintainer-mode' option to `configure'; `maintainer-only' rules turned off by
# default in Makefile.in's
AM_MAINTAINER_MODE
######################## test void*/uint #####################################
AC_CACHE_CHECK([ _____ weak test for C void* <=> unsigned int conversion],
[ac_cv_c_void_uint],
[AC_RUN_IFELSE(
[AC_LANG_SOURCE([[
#include <limits.h>
#include <stdio.h>
unsigned test[] =
{ 0x00000000, 0x000000ff, 0x0000ff00, 0x00ff0000, 0xff000000
, 0x0000000f, 0x00000f00, 0x000f0000, 0x00f00000, 0x0f000000
, 0x0000ffff, 0x00ffff00, 0xffff0000, 0x00ff00ff, 0xff00ff00
, 0x00ffffff, 0x00ffffff, 0xffffff00, 0xffff00ff, 0xffffffff
, 0x80000000, 0x40000000, 0xc0000000, 0x80000001, 0x40000001
} ;
int main
( int argc
, char* argv[]
)
{ int i = 0
; for (i=0;i<sizeof test/sizeof test[0];i++)
{ unsigned x = test[i]
; void* xv = (void*) x
; unsigned xu = (unsigned) xv
; if (x != xu)
{ fprintf(stderr, "%u failed to reappear\n", x)
; exit(1)
; }
}
return 0
; }
]])],
[ac_cv_c_void_uint=passed],
[ac_cv_c_void_uint=failed],
[true]
)]
)
if test "$ac_cv_c_void_uint" = "failed"; then
cat <<EOM
/\ custom check: num <-> void* failed: do not use --abc options.
/\/\ Consider contacting the author (http://micans.org/stijn/contact.html
\/\/ or https://lists.micans.org/listinfo/mcl-devel).
\/ Please include the file config.log.
EOM
fi
######################## helpful reminder #####################################
# extra ./configure options
AC_ARG_ENABLE(helpful-reminder,
AC_HELP_STRING([--enable-helpful-reminder], [output citation reference (default is yes)]),
[ case "${enableval}" in
yes) helpful_reminder=yes ;;
no) helpful_reminder=no ;;
*) AC_MSG_ERROR([bad value ${enableval} for --enable-helpful-reminder]) ;;
esac
], [helpful_reminder=yes]
)
if test "$helpful_reminder" = "yes"; then
AC_DEFINE(MCL_HELPFUL_REMINDER, [], [output citation reference (default yes)])
fi
######################## blast package #####################################
# extra ./configure options
AC_ARG_ENABLE(tribe,
[ --enable-tribe build contributed tribe tools (protein clustering stuff) ],
[
case "${enableval}" in
yes) tribe=true ;;
no) tribe=false ;;
*) AC_MSG_ERROR([bad value ${enableval} for --enable-tribe]) ;;
esac
], [tribe=false]
)
AM_CONDITIONAL(BUILD_TRIBE, test x$tribe = xtrue)
######################## tribe package #####################################
AC_ARG_ENABLE(blast,
[ --enable-blast build bio-informatics tools ],
[
case "${enableval}" in
yes) blast=true ;;
no) blast=false ;;
*) AC_MSG_ERROR([bad value ${enableval} for --enable-blast]) ;;
esac
], [blast=false]
)
AM_CONDITIONAL(BUILD_BLAST, test x$blast = xtrue)
## it would be nice if we'd be able to set
## our default -I compile option here
## AC_SUBST INCLUDES
## CPPFLAGS
# Checks for programs.
AC_PROG_AWK
AC_PROG_CC
AC_PROG_INSTALL
AC_PROG_LN_S
AC_PROG_RANLIB
# Checks for libraries.
# FIXME: Replace `main' with a function in `-lm':
AC_CHECK_LIB([m], [main])
# Checks for header files.
AC_HEADER_STDC
AC_CHECK_HEADERS([float.h limits.h malloc.h stdlib.h string.h unistd.h])
# Checks for typedefs, structures, and compiler characteristics.
AC_C_CONST
AC_TYPE_SIZE_T
# Figure out how to build C programs using POSIX threads, and
# use the variables given by acx_pthread.m4 in acinclude.m4
ACX_PTHREAD([
LIBS="$PTHREAD_LIBS $LIBS"
CFLAGS="$CFLAGS $PTHREAD_CFLAGS"
CC="$PTHREAD_CC"
])
# Checks for library functions.
AC_FUNC_MALLOC
AC_FUNC_MEMCMP
AC_FUNC_VPRINTF
AC_CHECK_FUNCS([floor memset pow rint sqrt strchr strpbrk strstr])
# AC_CONFIG_FILES([Makefile])
AC_OUTPUT([
Makefile
include/Makefile
doc/Makefile
graphs/Makefile
scripts/Makefile
util/Makefile
src/Makefile
src/taurus/Makefile
src/mcl/Makefile
src/impala/Makefile
src/shcl/Makefile
src/shmcl/Makefile
src/shmx/Makefile
src/shmcxquery/Makefile
src/shmcx/Makefile
src/contrib/Makefile
src/contrib/tribe/Makefile
src/alien/Makefile
src/alien/oxygen/Makefile
src/alien/oxygen/doc/Makefile
src/alien/oxygen/src/Makefile
])
|