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#!/usr/bin/make -f
# Uncomment this to turn on verbose mode.
# export DH_VERBOSE=1
export DEB_BUILD_MAINT_OPTIONS=hardening=+all
# allow bashism's in commandlines
SHELL = /bin/bash
# variables to be used in configure invocation. see
# autotools-dev/README.Debian.gz
export DEB_HOST_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_HOST_GNU_TYPE)
export DEB_BUILD_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_BUILD_GNU_TYPE)
# use autoconf 2.52 or newer
ifeq ($(DEB_BUILD_GNU_TYPE), $(DEB_HOST_GNU_TYPE))
confflags += --build $(DEB_HOST_GNU_TYPE)
else
confflags += --build $(DEB_BUILD_GNU_TYPE) --host $(DEB_HOST_GNU_TYPE)
endif
## Build BLAST parsing script mcxdeblast and the pipeline script mclblastline
## (sources in src/alien/oxygen). It encapsulates all the stages of parsing,
## matrix creation, running mcl, and formatting the result
## into a single application.
confflags += --enable-blast
## add --enable-tribe to confflags to add the upstreams supplied tribe tools
## (protein clustering stuff). This builds and installs the tools
##
## tribe-families tribe-matrix tribemcl tribe-parse
##
## We're not doing it since tribe-matrix segfaults, and the tools lackproper
## manpages. Furthermore, the BLAST parsing scripts can be used in place of
## the tribe module.
# confflags += --enable-tribe
## If you really want to suppress the citation reference printed by MCL (the
## one which looks like
##
## Please cite:
## Stijn van Dongen, Graph Clustering by Flow Simulation. PhD thesis,
## University of Utrecht, May 2000.
## ( http://www.library.uu.nl/digiarchief/dip/diss/1895620/full.pdf
## or http://micans.org/mcl/lit/svdthesis.pdf.gz)
## OR
## Stijn van Dongen, A cluster algorithm for graphs. Technical
## Report INS-R0010, National Research Institute for Mathematics
## and Computer Science in the Netherlands, Amsterdam, May 2000.
## ( http://www.cwi.nl/ftp/CWIreports/INS/INS-R0010.ps.Z
## or http://micans.org/mcl/lit/INS-R0010.ps.Z)
##
## ), then this is the place to do it. Of course we honor the choice of
## upstream here, and build as suggested by upsteam.
# confflags += --disable-helpful-reminder
docbackupdir:=$(CURDIR)/debian/doc.bak
%:
dh $@ --with ocaml
override_dh_clean:
dh_clean
find . -name "*.zmr" -delete
find . -name "*.zmt" -delete
rm -rf doc/*.1 doc/*.html doc/*-html doc/*.ps
rm -rf src/alien/oxygen/doc/*.1 src/alien/oxygen/doc/*.html src/alien/oxygen/doc/*.ps
override_dh_auto_build:
#dh_auto_build
autoreconf --install
oasis setup
ocaml setup.ml -all
override_dh_auto_configure:
dh_auto_configure -- $(confflags)
override_dh_install:
mv debian/tmp/usr/local/* debian/tmp/usr
rm -rf debian/tmp/usr/local
dh_install
for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \
sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' $${pl} ; \
done
override_dh_missing:
# Remove duplicated doc (*.html) and doc we do not want (*.ps)
rm -f debian/tmp/usr/share/doc/mcl/*.html \
debian/tmp/usr/share/doc/mcl/*.ps
dh_missing
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