1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
|
#!/bin/bash
# (C) Copyright 2007 Stijn van Dongen
#
# This file is part of MCL. You can redistribute and/or modify MCL under the
# terms of the GNU General Public License; either version 3 of the License or
# (at your option) any later version. You should have received a copy of the
# GPL along with MCL, in the file COPYING.
# pichi -n "001 002 003 004 005 006" -i "9 7 6 5 4 3" -S 20 -X 100 -Y 100 -p llx=90 -p lly=90 -p urx=510 -p ury=510 -o t -p edge=3edge -t falkner.tab -c falkner.coords -b falkner
set -e
stem=mcl
base=""
fnout=t.ps
defopts=""
X=0
Y=0
scale=10
rot=0
fnmci=""
fntab=""
fncoords=""
clus=""
color=("1 0.3 0" "1 0.5 0" "1 0.6 0" "1 0.7 0" "1 0.8 0" "1 0.9 0" "1 1 0")
while getopts :s:b:t:c:o:f:c:n:m:i:X:Y:S:R:p:h opt
do
case "$opt" in
h)
cat <<EOU
__[-b <base> Expect <base>.coords <base>.tab <base>.mci
[-s <stem> Expect <stem>.3 <stem>.5 ...
_[-f <fname> Use (_f_lat) clustering in fname
| [-m <fname> Use matrix in <fname>
|_[-c <fname> coordinate file name
[-t <fname> tab file name
-n <n1 n2 n3> 3 5 7 et cetera
-i <i1 i2 i3> In the range 0..9
-o <fname> Write to <fname>
-p key=val clm ps -set parameters
-R num rotate num degrees
-X <num> x translate
-Y <num> y translate
-S <num> scale factor
EOU
exit
;;
b)
base=$OPTARG
;;
n)
nums=($OPTARG)
;;
f)
clus=$OPTARG
;;
t)
fntab=$OPTARG
;;
c)
fncoords=$OPTARG
;;
m)
fnmci=$OPTARG
;;
i)
inward=($OPTARG)
;;
s)
stem=$OPTARG
;;
o)
fnout=$OPTARG
;;
R)
rot=$OPTARG
;;
S)
scale=$OPTARG
;;
p)
defopts="$defopts -def $OPTARG"
;;
X)
X=$OPTARG
;;
Y)
Y=$OPTARG
;;
:) echo "Flag $OPTARG needs argument"
exit 1;;
?) echo "Flag $OPTARG unknown"
exit 1;;
esac
done
if test ! "$fncoords"; then
fncoords=$base.coords
fi
if test ! "$fnmci"; then
fnmci=$base.mci
fi
if test ! "$fntab"; then
fntab=$base.tab
fi
clm ps $defopts -coords $fncoords -def edge=edge \
-node-grey 0 -imx $fnmci --header -o $base.header
clm ps $defopts -coords $fncoords -def edge=edge \
-node-grey 0 -imx $fnmci -o $base.include
if test "$clus"; then
mcxdump -imx $clus --no-values --tabr=$fntab --dump-rlines \
| perl -pe 'print "\n";' \
| clmsnare --close --stroke --fncoords=$fncoords \
--inward=0.5 > $base.body
echo "$X $Y translate" >> $base.header
echo "$scale $scale scale" >> $base.header
cat $base.header $base.include $base.body > $fnout
exit 0
fi
for ((i=0;i<${#nums[*]};i++)); do
n=${nums[$i]}
j=${inward[$i]}
c=${color[$i]}
colorname=fill_lev$i''color
echo "/$colorname [$c] def" >> $base.header
echo "/fill_lev$i {" >> $base.header
mcxdump -imx $stem.$n --no-values --tabr=$fntab --dump-rlines \
| perl -pe 'print "\n";' \
| clmsnare --close --fill --fillcolor=$colorname \
--fncoords=$fncoords --inward=0.$j >> $base.header
echo "} def" >> $base.header
done
for ((i=0;i<${#nums[*]};i++)); do
n=${nums[$i]}
j=${inward[$i]}
c=${color[$i]}
echo "/stroke_lev$i {" >> $base.header
mcxdump -imx $stem.$n --no-values --tabr=$fntab --dump-rlines \
| perl -pe 'print "\n";' \
| clmsnare --close --stroke --fncoords=$fncoords \
--inward=0.$j >> $base.header
echo "} def" >> $base.header
done
fnthis=$fnout.b.ps
cat $base.header > $fnthis
echo "$X $Y translate" >> $fnthis
echo "$scale $scale scale" >> $fnthis
cat $base.include >> $fnthis
echo showpage >> $fnthis
for ((i=0;i<${#nums[*]};i++)); do
fnthis=$fnout.$i.ps
cat $base.header > $fnthis
echo "$X $Y translate" >> $fnthis
echo "$scale $scale scale" >> $fnthis
for ((j=$i;j>=0;j--)); do
echo fill_lev$j >> $fnthis
done
cat $base.include >> $fnthis
for ((j=$i;j>=0;j--)); do
echo stroke_lev$j >> $fnthis
done
echo showpage >> $fnthis
done
for ((i=0;i<${#nums[*]};i++)); do
convert -rotate $rot $fnout.$i.ps $fnout.$i.png
done
|
