Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: mdanalysis
Upstream-Contact: O. Beckstein and team
Source: https://github.com/MDAnalysis/mdanalysis

Files: *
Copyright: 2005 Naveen Michaud-Agrawal,
           2006-2020 MDAnalysis Core Developer Team and contributers
License: GPL-2+

Files: CODE_OF_CONDUCT.md
Copyright: 2005 Naveen Michaud-Agrawal,
           2006-2020 MDAnalysis Core Developer Team and contributers
License: CCA-3

Files: package/doc/sphinx/source/documentation_pages/analysis/hole2.rst
Copyright: 2020 Lily Wang
License: GPL-3

Files: package/doc/sphinx/source/documentation_pages/analysis/encore.rst
Copyright: 2015-2017 Matteo Tiberti <matteo.tiberti@gmail.com>,
 Wouter Boomsma, Tone Bengtsen
License: GPL-3

Files: package/MDAnalysis/analysis/align.py
Copyright: 2010-2013 Oliver Beckstein, Joshua Adelman
License: GPL-3

Files: package/MDAnalysis/analysis/bat.py
Copyright: 2020 Soohaeng Yoo Willow and David Minh
License: GPL-2+

Files: package/MDAnalysis/analysis/density.py
Copyright: 2007-2011 Oliver Beckstein <orbeckst@gmail.com>
License: GPL-3+
Comment:
 based on code from Hop --- a framework to analyze solvation dynamics
 from MD simulations.
 .
 https://github.com/Becksteinlab/hop/blob/master/hop/density.py

Files: package/MDAnalysis/analysis/diffusionmap.py
Copyright: 2016 Eugen Hruska, John Detlefs
License: GPL-2

Files: package/MDAnalysis/analysis/dihedrals.py
Copyright: 2018 Henry Mull
License: GPL-2

Files: package/MDAnalysis/analysis/gnm.py
Copyright: 2011 Benjamin Hall <benjamin.a.hall@ucl.ac.uk>
License: GPL-2+

Files: package/MDAnalysis/analysis/helix_analysis.py
Copyright: 2020 Lily Wang
License: GPL-3

Files: package/MDAnalysis/analysis/msd.py
Copyright: 2020 Hugo MacDermott-Opeskin
License: GPL-2

Files: package/MDAnalysis/analysis/nuclinfo.py
Copyright: 2011 Elizabeth Denning
License: GPL-3

Files: package/MDAnalysis/analysis/pca.py
Copyright: 2016 John Detlefs
License: GPL-3

Files: package/MDAnalysis/analysis/polymer.py
Copyright: 2015, 2018 Richard J. Gowers
License: GPL-3

Files: package/MDAnalysis/analysis/psa.py
Copyright: 2015 Sean Seyler
License: GPL-3

Files: package/MDAnalysis/analysis/rms.py
Copyright: 2016 Oliver Beckstein, David L. Dotson, John Detlefs
License: GPL-2

Files: package/MDAnalysis/analysis/waterdynamics.py
Copyright: 2014-2015 Alejandro Bernardin
License: GPL-3

Files: package/MDAnalysis/analysis/hole2/*.py
Copyright: 2020 Lily Wang
License: GPL-3

Files: package/MDAnalysis/analysis/hbonds/hbond_autocorrel.py
Copyright: 2014 Richard J. Gowers
License: GPL-3

Files: package/MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py
Copyright: 2014 Richard J. Gowers
License: GPL-3

Files: package/MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py
Copyright: 2017-2018 Zhiyi Wu <zhiyi.wu@gtc.ox.ac.uk>
License: GPL-3

Files: package/MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py
Copyright: 2019 Paul Smith
License: GPL-3

Files: package/MDAnalysis/analysis/legacy/x3dna.py
Copyright: 2013-2014 Elizabeth Denning
License: GPL-2

Files: package/MDAnalysis/lib/correlations.py
Copyright: 2020 Paul Smith & Mateusz Bieniek
License: GPL-2

Files: package/MDAnalysis/coordinates/memory.py
Copyright: 2016 Wouter Boomsma <wb@di.ku.dk>
License: GPL-2

Files: package/MDAnalysis/lib/formats/src/xdrfile.c
Copyright: 2009 Frans van Hoesel <f.h.j.van.hoesel@rug.nl>,
 2009-2014, Erik Lindahl <erik.lindahl@scilifelab.se>,
 2009-2014, David van der Spoel <david.vanderspoel@icm.uu.se>
License: BSD-2-clause

Files: package/MDAnalysis/lib/formats/libdcd.pyx
Copyright: 2006 Justin Gullingsrud,
           2006-2017 MDAnalysis Core Developer Team
License: GPL-2+

Files: package/MDAnalysis/transformations/*
Copyright: 2006 Christoph Gohlke <http://www.lfd.uci.edu/~gohlke/>
           2006-2017 MDAnalysis Core Developer Team
License: GPL-2+

Files: package/MDAnalysis/lib/qcprot.*
Copyright: 2005-2010 Douglas L. Theobald <dtheobald@brandeis.edu>,
           2009-2010 Pu Liu <pliu24@its.jnj.com>,
           2011      Joshua L. Adelman <jla65@pitt.edu>,
           2016       Robert R. Delgado, Cornell University
                      and Arizona State University
License: BSD-3-clause
Comment:
 If you use this QCP rotation calculation method in a publication, please
 reference:
 .
   Douglas L. Theobald (2005)
   "Rapid calculation of RMSD using a quaternion-based characteristic
   polynomial."
   Acta Crystallographica A 61(4):478-480.
 .
   Pu Liu, Dmitris K. Agrafiotis, and Douglas L. Theobald (2010)
   "Fast determination of the optimal rotational matrix for macromolecular
   superpositions."
   J. Comput. Chem. 31, 1561-1563.
 .
 A full description of the method, along with the original C
 implementation can be found at http://theobald.brandeis.edu/qcp/
 .
 Python Port by Joshua L. Adelman

Files: package/MDAnalysis/visualization/streamlines*.py
Copyright: 2014 Tyler Reddy and Matthieu Chavent
License: GPL-3

Files: debian/*
Copyright: 2020 Drew Parsons <dparsons@debian.org>
License: GPL-2+

License: GPL-2
 This package is free software; you can redistribute it and/or modify
 it under the terms of the GNU General Public License as published by
 the Free Software Foundation; version 2 of the License.
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 This package is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 GNU General Public License for more details.
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 You should have received a copy of the GNU General Public License
 along with this program. If not, see <https://www.gnu.org/licenses/>
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 On Debian systems, the complete text of the GNU General
 Public License version 2 can be found in "/usr/share/common-licenses/GPL-2".

License: GPL-2+
 This package is free software; you can redistribute it and/or modify
 it under the terms of the GNU General Public License as published by
 the Free Software Foundation; either version 2 of the License, or
 (at your option) any later version.
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 This package is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 GNU General Public License for more details.
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 You should have received a copy of the GNU General Public License
 along with this program. If not, see <https://www.gnu.org/licenses/>
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 On Debian systems, the complete text of the GNU General
 Public License version 2 can be found in "/usr/share/common-licenses/GPL-2",
 or version 3 in "/usr/share/common-licenses/GPL-3",

License: GPL-3
 This package is free software; you can redistribute it and/or modify
 it under the terms of the GNU General Public License as published by
 the Free Software Foundation; version 3 of the License.
 .
 This package is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 GNU General Public License for more details.
 .
 You should have received a copy of the GNU General Public License
 along with this program. If not, see <https://www.gnu.org/licenses/>
 .
 On Debian systems, the complete text of the GNU General
 Public License version 3 can be found in "/usr/share/common-licenses/GPL-3".

License: GPL-3+
 This package is free software; you can redistribute it and/or modify
 it under the terms of the GNU General Public License as published by
 the Free Software Foundation; either version 3 of the License, or
 (at your option) any later version.
 .
 This package is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 GNU General Public License for more details.
 .
 You should have received a copy of the GNU General Public License
 along with this program. If not, see <https://www.gnu.org/licenses/>
 .
 On Debian systems, the complete text of the GNU General
 Public License version 3 can be found in "/usr/share/common-licenses/GPL-3".

License: BSD-2-clause
 All rights reserved.
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 modification, are permitted provided that the following conditions
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License: BSD-3-clause
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 BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS
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 AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
 LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY
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License: CCA-3
 Creative Commons Attribution 3.0 Unported (CC BY 3.0)
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