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import re
import pytest
import mdtraj
from mdtraj.testing.docstrings import docstring_verifiers, import_all_modules
SKIP_MODULES = [
r"mdtraj\.utils\.external",
r"mdtraj\.utils\.six",
r"mdtraj\.utils\.unit\.unit_math",
r"mdtraj\.utils\.unit\.baseunit",
r"mdtraj\.utils\.unit\.prefix",
r"mdtraj\.utils\.unit\.unit",
r"mdtraj\.utils\.unit\.quantity",
r"mdtraj\.utils\.unit\.mymatrix",
r"mdtraj\.formats\.lh5",
r"mdtraj\.formats\.hdf5",
r"mdtraj\.formats\.pdb\.pdbstructure",
r"mdtraj\.scripts",
r"mdtraj\.testing\.docscrape",
r"mdtraj\.io",
r"mdtraj\._version",
]
MODULES = import_all_modules(mdtraj)
@pytest.fixture(params=MODULES, ids=lambda x: x.__name__)
def module(request):
mod = request.param
if any(re.search(s, mod.__name__) for s in SKIP_MODULES):
pytest.skip("Skip checking certain modules' docstrings")
return mod
def test_docstrings(module):
for test in docstring_verifiers(module):
test()
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