1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
|
#!/bin/bash
# Latest version of this script can be found at:
# https://github.com/NanoComp/meep/blob/master/contrib/build-meep.sh
help ()
{
cat << EOF
$1: Download MEEP sources and dependencies, compile, and install
Usage: $1 [options]
EOF
sed -ne 's,[ \t]*\(-[^ \t]*\))[^#]*#[ \t]*\(.*\), \1 \2,p' "$1"
echo ""
exit 1
}
[ -z "$1" ] && echo "(use -h for help)"
installdeps=true
while [ ! -z "$1" ]; do
case "$1" in
-h) # help
help "$0"
;;
-d) # <installdir> (default: current directory)
DESTDIR="$2"
shift
;;
-s) # use 'sudo' for 'make install'
SUDO=sudo
;;
-n) # do not check for distribution dependencies
installdeps=false
;;
*)
echo "'$1' ?"
help "$0"
;;
esac
shift
done
# detect wether DESTDIR is ending with src/
[ -z ${DESTDIR} ] && DESTDIR=$(pwd)
[ ${DESTDIR##*/} = src ] && DESTDIR=$(cd $(pwd)/..; pwd)
SRCDIR=${DESTDIR}/src
cat << EOF
This sript will download or update sources, compile and install MEEP.
Please ensure the following final paths fit your needs:
'${DESTDIR}/bin/meep'
'${DESTDIR}/lib/...'
'${DESTDIR}/share/...'
'${DESTDIR}/...'
'${SRCDIR}/<sources>'
Press return to continue
EOF
read junk
if ! lsb_release; then
echo "Minimum requirements:"
echo " Ubuntu:"
echo " sudo apt-get -y install lsb-release sudo git"
echo " CentOS:"
echo " sudo yum -y install redhat-lsb-core sudo git"
echo ""
exit 1
fi
set -ex
ubuntu=false
centos=false
distrib=$(lsb_release -r -s)
case "$distrib" in
18.04) # ubuntu 18.04 bionic
libpng=libpng-dev
libpython=libpython3-dev
ubuntu=true
;;
16.04) # ubuntu 16.04 xenial
libpng=libpng16-dev
libpython=libpython3.5-dev
ubuntu=true
;;
7.*) # CentOS 7.x
centos=true
;;
*)
echo "unsupported distribution '$(lsb_release -a)', edit and fix!"
false
;;
esac
mkdir -p ${SRCDIR}
cd ${SRCDIR}
gitclone ()
{
repo=${1##*/}
name=${repo%%.*}
echo $repo $name
if [ -d $name ]; then
( cd $name; git pull; )
else
git clone --depth=1 $1
fi
}
autogensh ()
{
sh autogen.sh PKG_CONFIG_PATH="${PKG_CONFIG_PATH}" RPATH_FLAGS="${RPATH_FLAGS}" LDFLAGS="${LDFLAGS}" CFLAGS="${CFLAGS}" CPPFLAGS="${CPPFLAGS}" \
--disable-static --enable-shared --prefix="${DESTDIR}" \
--with-libctl=${DESTDIR}/share/libctl \
"$@"
}
if $installdeps && $ubuntu; then
sudo apt-get update
sudo apt-get -y install \
build-essential \
gfortran \
libblas-dev \
liblapack-dev \
libgmp-dev \
swig \
libgsl-dev \
autoconf \
pkg-config \
$libpng \
git \
guile-2.0-dev \
libfftw3-dev \
libhdf5-openmpi-dev \
hdf5-tools \
$libpython \
python3-numpy \
python3-scipy \
python3-pip \
ffmpeg \
[ "$distrib" = 16.04 ] && sudo -H pip3 install --upgrade pip
sudo -H pip3 install --no-cache-dir mpi4py
export HDF5_MPI="ON"
sudo -H pip3 install --no-binary=h5py h5py
sudo -H pip3 install matplotlib>3.0.0
RPATH_FLAGS="-Wl,-rpath,${DESTDIR}/lib:/usr/lib/x86_64-linux-gnu/hdf5/openmpi"
LDFLAGS="-L${DESTDIR}/lib -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi ${RPATH_FLAGS}"
CFLAGS="-I${DESTDIR}/include -I/usr/include/hdf5/openmpi"
fi
if $installdeps && $centos; then
sudo yum -y --enablerepo=extras install epel-release
sudo yum -y install \
bison \
byacc \
cscope \
ctags \
cvs \
diffstat \
oxygen \
flex \
gcc \
gcc-c++ \
gcc-gfortran \
gettext \
git \
indent \
intltool \
libtool \
patch \
patchutils \
rcs \
redhat-rpm-config \
rpm-build \
subversion \
systemtap \
wget
sudo yum -y install \
openblas-devel \
fftw3-devel \
libpng-devel \
gsl-devel \
gmp-devel \
pcre-devel \
libtool-ltdl-devel \
libunistring-devel \
libffi-devel \
gc-devel \
zlib-devel \
openssl-devel \
sqlite-devel \
bzip2-devel \
ffmpeg
sudo yum -y install \
openmpi-devel \
hdf5-openmpi-devel \
guile-devel \
swig
export PATH=${PATH}:/usr/lib64/openmpi/bin
RPATH_FLAGS="-Wl,-rpath,${DESTDIR}/lib:/usr/lib64/openmpi/lib"
LDFLAGS="-L${DESTDIR}/lib -L/usr/lib64/openmpi/lib ${RPATH_FLAGS}"
CFLAGS="-I${DESTDIR}/include -I/usr/include/openmpi-x86_64/"
fi
CPPFLAGS=${CFLAGS}
PKG_CONFIG_PATH=${DESDTIR}/pkgconfig
export PKG_CONFIG_PATH
export PATH=${DESTDIR}/bin:${PATH}
mkdir -p $SRCDIR
cd $SRCDIR
gitclone https://github.com/NanoComp/harminv.git
cd harminv/
autogensh
make -j && $SUDO make install
cd $SRCDIR
gitclone https://github.com/NanoComp/libctl.git
cd libctl/
autogensh
make -j && $SUDO make install
cd $SRCDIR
gitclone https://github.com/NanoComp/h5utils.git
cd h5utils/
autogensh CC=mpicc
make -j && $SUDO make install
cd $SRCDIR
gitclone https://github.com/NanoComp/mpb.git
cd mpb/
autogensh CC=mpicc --with-hermitian-eps
make -j && $SUDO make install
cd $SRCDIR
gitclone https://github.com/HomerReid/libGDSII.git
cd libGDSII/
autogensh
make -j && $SUDO make install
cd $SRCDIR
gitclone https://github.com/NanoComp/meep.git
cd meep/
autogensh --with-mpi --with-openmp PYTHON=python3
make -j && $SUDO make install
# all done
|
