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#!/usr/bin/env bash
set -e
if [[ ! -d /code ]] ; then
echo "Must mount megadepth directory at /code inside container"
fi
cd /code
rm -rf htslib libBigWig
./get_htslib.sh
./get_libBigWig.sh
set -x
DR=build-release-temp
mkdir -p ${DR}
pushd ${DR}
cmake -DCMAKE_BUILD_TYPE=Release ..
make
ldd -v megadepth
./megadepth --help
popd
cp ${DR}/megadepth ./megadepth
rm -rf ${DR}
DR=build-debug-temp
mkdir -p ${DR}
pushd ${DR}
cmake -DCMAKE_BUILD_TYPE=Debug ..
make
ldd -v megadepth
./megadepth --help
popd
cp ${DR}/megadepth ./megadepth-debug
rm -rf ${DR}
zip megadepth.zip megadepth megadepth-debug
#rm -f megadepth megadepth-debug
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