File: melting.log

package info (click to toggle)
melting 4.3c-1
  • links: PTS, VCS
  • area: main
  • in suites: squeeze
  • size: 3,640 kB
  • ctags: 175
  • sloc: ansic: 2,013; perl: 547; xml: 125; makefile: 49
file content (283 lines) | stat: -rw-r--r-- 10,335 bytes parent folder | download | duplicates (2)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
This is pdfTeXk, Version 3.141592-1.40.3 (Web2C 7.5.6) (format=latex 2009.5.18)  1 JUN 2009 10:17
entering extended mode
 %&-line parsing enabled.
**melting.tex
(./melting.tex
LaTeX2e <2005/12/01>
Babel <v3.8h> and hyphenation patterns for english, usenglishmax, dumylang, noh
yphenation, arabic, basque, bulgarian, coptic, welsh, czech, slovak, german, ng
erman, danish, esperanto, spanish, catalan, galician, estonian, farsi, finnish,
 french, greek, monogreek, ancientgreek, croatian, hungarian, interlingua, ibyc
us, indonesian, icelandic, italian, latin, mongolian, dutch, norsk, polish, por
tuguese, pinyin, romanian, russian, slovenian, uppersorbian, serbian, swedish, 
turkish, ukenglish, ukrainian, loaded.

(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/base/article.cls
Document Class: article 2005/09/16 v1.4f Standard LaTeX document class

(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/base/size10.clo
File: size10.clo 2005/09/16 v1.4f Standard LaTeX file (size option)
)
\c@part=\count79
\c@section=\count80
\c@subsection=\count81
\c@subsubsection=\count82
\c@paragraph=\count83
\c@subparagraph=\count84
\c@figure=\count85
\c@table=\count86
\abovecaptionskip=\skip41
\belowcaptionskip=\skip42
\bibindent=\dimen102
)
(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/base/inputenc.sty
Package: inputenc 2006/05/05 v1.1b Input encoding file
\inpenc@prehook=\toks14
\inpenc@posthook=\toks15

(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/base/latin1.def
File: latin1.def 2006/05/05 v1.1b Input encoding file
))
(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/base/fontenc.sty
Package: fontenc 2005/09/27 v1.99g Standard LaTeX package

(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/base/t1enc.def
File: t1enc.def 2005/09/27 v1.99g Standard LaTeX file
LaTeX Font Info:    Redeclaring font encoding T1 on input line 43.
))
(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/psnfss/times.sty
Package: times 2005/04/12 PSNFSS-v9.2a (SPQR) 
)

! LaTeX Error: File `mathtime.sty' not found.

Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)

Enter file name: 

(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/ltxmisc/url.sty
\Urlmuskip=\muskip10
Package: url 2005/06/27  ver 3.2  Verb mode for urls, etc.
)
(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/amsmath/amsmath.sty
Package: amsmath 2000/07/18 v2.13 AMS math features
\@mathmargin=\skip43

For additional information on amsmath, use the `?' option.

(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/amsmath/amstext.sty
Package: amstext 2000/06/29 v2.01

(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/amsmath/amsgen.sty
File: amsgen.sty 1999/11/30 v2.0
\@emptytoks=\toks16
\ex@=\dimen103
))
(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/amsmath/amsbsy.sty
Package: amsbsy 1999/11/29 v1.2d
\pmbraise@=\dimen104
)
(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/amsmath/amsopn.sty
Package: amsopn 1999/12/14 v2.01 operator names
)
\inf@bad=\count87
LaTeX Info: Redefining \frac on input line 211.
\uproot@=\count88
\leftroot@=\count89
LaTeX Info: Redefining \overline on input line 307.
\classnum@=\count90
\DOTSCASE@=\count91
LaTeX Info: Redefining \ldots on input line 379.
LaTeX Info: Redefining \dots on input line 382.
LaTeX Info: Redefining \cdots on input line 467.
\Mathstrutbox@=\box26
\strutbox@=\box27
\big@size=\dimen105
LaTeX Font Info:    Redeclaring font encoding OML on input line 567.
LaTeX Font Info:    Redeclaring font encoding OMS on input line 568.
\macc@depth=\count92
\c@MaxMatrixCols=\count93
\dotsspace@=\muskip11
\c@parentequation=\count94
\dspbrk@lvl=\count95
\tag@help=\toks17
\row@=\count96
\column@=\count97
\maxfields@=\count98
\andhelp@=\toks18
\eqnshift@=\dimen106
\alignsep@=\dimen107
\tagshift@=\dimen108
\tagwidth@=\dimen109
\totwidth@=\dimen110
\lineht@=\dimen111
\@envbody=\toks19
\multlinegap=\skip44
\multlinetaggap=\skip45
\mathdisplay@stack=\toks20
LaTeX Info: Redefining \[ on input line 2666.
LaTeX Info: Redefining \] on input line 2667.
)
(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/base/alltt.sty
Package: alltt 1997/06/16 v2.0g defines alltt environment
)
(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/graphics/graphics.sty
Package: graphics 2006/02/20 v1.0o Standard LaTeX Graphics (DPC,SPQR)

(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/graphics/trig.sty
Package: trig 1999/03/16 v1.09 sin cos tan (DPC)
)
(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf/t
ex/latex/config/graphics.cfg
File: graphics.cfg 2007/01/18 v1.5 graphics configuration of teTeX/TeXLive
)
Package graphics Info: Driver file: dvips.def on input line 90.

(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/graphics/dvips.def
File: dvips.def 1999/02/16 v3.0i Driver-dependant file (DPC,SPQR)
))
No file melting.aux.
\openout1 = `melting.aux'.

LaTeX Font Info:    Checking defaults for OML/cmm/m/it on input line 10.
LaTeX Font Info:    ... okay on input line 10.
LaTeX Font Info:    Checking defaults for T1/cmr/m/n on input line 10.
LaTeX Font Info:    ... okay on input line 10.
LaTeX Font Info:    Checking defaults for OT1/cmr/m/n on input line 10.
LaTeX Font Info:    ... okay on input line 10.
LaTeX Font Info:    Checking defaults for OMS/cmsy/m/n on input line 10.
LaTeX Font Info:    ... okay on input line 10.
LaTeX Font Info:    Checking defaults for OMX/cmex/m/n on input line 10.
LaTeX Font Info:    ... okay on input line 10.
LaTeX Font Info:    Checking defaults for U/cmr/m/n on input line 10.
LaTeX Font Info:    ... okay on input line 10.
LaTeX Font Info:    Try loading font information for T1+ptm on input line 10.

(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/psnfss/t1ptm.fd
File: t1ptm.fd 2001/06/04 font definitions for T1/ptm.
)
LaTeX Font Info:    Font shape `T1/ptm/bx/n' in size <14.4> not available
(Font)              Font shape `T1/ptm/b/n' tried instead on input line 12.
LaTeX Font Info:    Font shape `T1/ptm/bx/n' in size <10> not available
(Font)              Font shape `T1/ptm/b/n' tried instead on input line 15.
LaTeX Font Info:    Font shape `T1/ptm/bx/it' in size <10> not available
(Font)              Font shape `T1/ptm/b/it' tried instead on input line 41.

Overfull \hbox (36.78766pt too wide) in paragraph at lines 41--55
\T1/ptm/m/n/10 al 1996), \T1/ptm/m/it/10 sug96a.nn \T1/ptm/m/n/10 (Sug-i-moto e
t al 1996), \T1/ptm/m/it/10 san04a.nn \T1/ptm/m/n/10 (San-talu-cia et al 2004)(
DNA/DNA),
 []


Overfull \hbox (10.68724pt too wide) in paragraph at lines 41--55
\T1/ptm/m/it/10 fre86a.nn \T1/ptm/m/n/10 (Freier et al 1986), \T1/ptm/m/it/10 x
ia98a.nn \T1/ptm/m/n/10 (Xia et al 1998) (RNA/RNA) and \T1/ptm/m/it/10 sug95a.n
n
 []

[1

]
LaTeX Font Info:    Try loading font information for T1+pcr on input line 96.

(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/psnfss/t1pcr.fd
File: t1pcr.fd 2001/06/04 font definitions for T1/pcr.
) [2] [3]
LaTeX Font Info:    Font shape `T1/ptm/bx/n' in size <12> not available
(Font)              Font shape `T1/ptm/b/n' tried instead on input line 203.
 [4]
File: image1M.eps Graphic file (type eps)
 <image1M.eps>
Overfull \hbox (23.37625pt too wide) in paragraph at lines 225--227
[][] 
 []

File: image0_11M.eps Graphic file (type eps)
<image0_11M.eps>
Overfull \hbox (62.5225pt too wide) in paragraph at lines 231--233
[][] 
 []


LaTeX Warning: `h' float specifier changed to `ht'.

[5]

Package amsmath Warning: Foreign command \atopwithdelims;
(amsmath)                \frac or \genfrac should be used instead
(amsmath)                 on input line 275.

[6]
Overfull \hbox (12.15599pt too wide) in paragraph at lines 283--291
[][] 
 []

[7]
File: salt.eps Graphic file (type eps)
 <salt.eps> [8]
Overfull \hbox (19.42992pt too wide) detected at line 383
[] \OT1/cmr/m/n/10 = [] + (4\OML/cmm/m/it/10 :\OT1/cmr/m/n/10 29\OML/cmm/m/it/1
0 Fgc \OMS/cmsy/m/n/10 ^^@ \OT1/cmr/m/n/10 3\OML/cmm/m/it/10 :\OT1/cmr/m/n/10 9
5) \OMS/cmsy/m/n/10 ^^A []\OT1/cmr/m/n/10 10[] [][[][]] + 9\OML/cmm/m/it/10 :\O
T1/cmr/m/n/10 40 \OMS/cmsy/m/n/10 ^^A []\OT1/cmr/m/n/10 10[]([][[][]])[])
 []

File: Owczarzy2.eps Graphic file (type eps)
<Owczarzy2.eps>
File: Owczarzy3.eps Graphic file (type eps)
 <Owczarzy3.eps>
File: Owczarzy1.eps Graphic file (type eps)
 <Owczarzy1.eps> [9] [10]
Overfull \hbox (60.35985pt too wide) in paragraph at lines 546--549
\T1/pcr/m/n/10 recherche / unites / neubiomol / meltinghome . html$ \T1/ptm/m/n
/10 and at $\T1/pcr/m/n/10 https : / / sourceforge .
 []

[11]
LaTeX Font Info:    Try loading font information for OMS+ptm on input line 573.


(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/psnfss/omsptm.fd
File: omsptm.fd 
)
LaTeX Font Info:    Font shape `OMS/ptm/m/n' in size <10> not available
(Font)              Font shape `OMS/cmsy/m/n' tried instead on input line 573.

Overfull \hbox (0.82664pt too wide) in paragraph at lines 589--595
\T1/ptm/m/n/10 the HTML in-ter-face to melt-ing. Thanks to Ni-rav Mer-chant, Ta
e-joon Kwon, Leo Schalk-
 []

[12] [13] [14] [15] [16] (./melting.aux) ) 
Here is how much of TeX's memory you used:
 1492 strings out of 94074
 19375 string characters out of 1150984
 69439 words of memory out of 15000000
 4783 multiletter control sequences out of 10000+50000
 28350 words of font info for 37 fonts, out of 1200000 for 2000
 645 hyphenation exceptions out of 8191
 27i,11n,20p,453b,238s stack positions out of 10000i,500n,6000p,200000b,5000s

Output written on melting.dvi (16 pages, 37164 bytes).