1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
|
This is pdfTeXk, Version 3.141592-1.40.3 (Web2C 7.5.6) (format=latex 2009.5.18) 1 JUN 2009 10:17
entering extended mode
%&-line parsing enabled.
**melting.tex
(./melting.tex
LaTeX2e <2005/12/01>
Babel <v3.8h> and hyphenation patterns for english, usenglishmax, dumylang, noh
yphenation, arabic, basque, bulgarian, coptic, welsh, czech, slovak, german, ng
erman, danish, esperanto, spanish, catalan, galician, estonian, farsi, finnish,
french, greek, monogreek, ancientgreek, croatian, hungarian, interlingua, ibyc
us, indonesian, icelandic, italian, latin, mongolian, dutch, norsk, polish, por
tuguese, pinyin, romanian, russian, slovenian, uppersorbian, serbian, swedish,
turkish, ukenglish, ukrainian, loaded.
(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/base/article.cls
Document Class: article 2005/09/16 v1.4f Standard LaTeX document class
(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/base/size10.clo
File: size10.clo 2005/09/16 v1.4f Standard LaTeX file (size option)
)
\c@part=\count79
\c@section=\count80
\c@subsection=\count81
\c@subsubsection=\count82
\c@paragraph=\count83
\c@subparagraph=\count84
\c@figure=\count85
\c@table=\count86
\abovecaptionskip=\skip41
\belowcaptionskip=\skip42
\bibindent=\dimen102
)
(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/base/inputenc.sty
Package: inputenc 2006/05/05 v1.1b Input encoding file
\inpenc@prehook=\toks14
\inpenc@posthook=\toks15
(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/base/latin1.def
File: latin1.def 2006/05/05 v1.1b Input encoding file
))
(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/base/fontenc.sty
Package: fontenc 2005/09/27 v1.99g Standard LaTeX package
(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/base/t1enc.def
File: t1enc.def 2005/09/27 v1.99g Standard LaTeX file
LaTeX Font Info: Redeclaring font encoding T1 on input line 43.
))
(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/psnfss/times.sty
Package: times 2005/04/12 PSNFSS-v9.2a (SPQR)
)
! LaTeX Error: File `mathtime.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
Enter file name:
(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/ltxmisc/url.sty
\Urlmuskip=\muskip10
Package: url 2005/06/27 ver 3.2 Verb mode for urls, etc.
)
(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/amsmath/amsmath.sty
Package: amsmath 2000/07/18 v2.13 AMS math features
\@mathmargin=\skip43
For additional information on amsmath, use the `?' option.
(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/amsmath/amstext.sty
Package: amstext 2000/06/29 v2.01
(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/amsmath/amsgen.sty
File: amsgen.sty 1999/11/30 v2.0
\@emptytoks=\toks16
\ex@=\dimen103
))
(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/amsmath/amsbsy.sty
Package: amsbsy 1999/11/29 v1.2d
\pmbraise@=\dimen104
)
(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/amsmath/amsopn.sty
Package: amsopn 1999/12/14 v2.01 operator names
)
\inf@bad=\count87
LaTeX Info: Redefining \frac on input line 211.
\uproot@=\count88
\leftroot@=\count89
LaTeX Info: Redefining \overline on input line 307.
\classnum@=\count90
\DOTSCASE@=\count91
LaTeX Info: Redefining \ldots on input line 379.
LaTeX Info: Redefining \dots on input line 382.
LaTeX Info: Redefining \cdots on input line 467.
\Mathstrutbox@=\box26
\strutbox@=\box27
\big@size=\dimen105
LaTeX Font Info: Redeclaring font encoding OML on input line 567.
LaTeX Font Info: Redeclaring font encoding OMS on input line 568.
\macc@depth=\count92
\c@MaxMatrixCols=\count93
\dotsspace@=\muskip11
\c@parentequation=\count94
\dspbrk@lvl=\count95
\tag@help=\toks17
\row@=\count96
\column@=\count97
\maxfields@=\count98
\andhelp@=\toks18
\eqnshift@=\dimen106
\alignsep@=\dimen107
\tagshift@=\dimen108
\tagwidth@=\dimen109
\totwidth@=\dimen110
\lineht@=\dimen111
\@envbody=\toks19
\multlinegap=\skip44
\multlinetaggap=\skip45
\mathdisplay@stack=\toks20
LaTeX Info: Redefining \[ on input line 2666.
LaTeX Info: Redefining \] on input line 2667.
)
(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/base/alltt.sty
Package: alltt 1997/06/16 v2.0g defines alltt environment
)
(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/graphics/graphics.sty
Package: graphics 2006/02/20 v1.0o Standard LaTeX Graphics (DPC,SPQR)
(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/graphics/trig.sty
Package: trig 1999/03/16 v1.09 sin cos tan (DPC)
)
(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf/t
ex/latex/config/graphics.cfg
File: graphics.cfg 2007/01/18 v1.5 graphics configuration of teTeX/TeXLive
)
Package graphics Info: Driver file: dvips.def on input line 90.
(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/graphics/dvips.def
File: dvips.def 1999/02/16 v3.0i Driver-dependant file (DPC,SPQR)
))
No file melting.aux.
\openout1 = `melting.aux'.
LaTeX Font Info: Checking defaults for OML/cmm/m/it on input line 10.
LaTeX Font Info: ... okay on input line 10.
LaTeX Font Info: Checking defaults for T1/cmr/m/n on input line 10.
LaTeX Font Info: ... okay on input line 10.
LaTeX Font Info: Checking defaults for OT1/cmr/m/n on input line 10.
LaTeX Font Info: ... okay on input line 10.
LaTeX Font Info: Checking defaults for OMS/cmsy/m/n on input line 10.
LaTeX Font Info: ... okay on input line 10.
LaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 10.
LaTeX Font Info: ... okay on input line 10.
LaTeX Font Info: Checking defaults for U/cmr/m/n on input line 10.
LaTeX Font Info: ... okay on input line 10.
LaTeX Font Info: Try loading font information for T1+ptm on input line 10.
(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/psnfss/t1ptm.fd
File: t1ptm.fd 2001/06/04 font definitions for T1/ptm.
)
LaTeX Font Info: Font shape `T1/ptm/bx/n' in size <14.4> not available
(Font) Font shape `T1/ptm/b/n' tried instead on input line 12.
LaTeX Font Info: Font shape `T1/ptm/bx/n' in size <10> not available
(Font) Font shape `T1/ptm/b/n' tried instead on input line 15.
LaTeX Font Info: Font shape `T1/ptm/bx/it' in size <10> not available
(Font) Font shape `T1/ptm/b/it' tried instead on input line 41.
Overfull \hbox (36.78766pt too wide) in paragraph at lines 41--55
\T1/ptm/m/n/10 al 1996), \T1/ptm/m/it/10 sug96a.nn \T1/ptm/m/n/10 (Sug-i-moto e
t al 1996), \T1/ptm/m/it/10 san04a.nn \T1/ptm/m/n/10 (San-talu-cia et al 2004)(
DNA/DNA),
[]
Overfull \hbox (10.68724pt too wide) in paragraph at lines 41--55
\T1/ptm/m/it/10 fre86a.nn \T1/ptm/m/n/10 (Freier et al 1986), \T1/ptm/m/it/10 x
ia98a.nn \T1/ptm/m/n/10 (Xia et al 1998) (RNA/RNA) and \T1/ptm/m/it/10 sug95a.n
n
[]
[1
]
LaTeX Font Info: Try loading font information for T1+pcr on input line 96.
(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/psnfss/t1pcr.fd
File: t1pcr.fd 2001/06/04 font definitions for T1/pcr.
) [2] [3]
LaTeX Font Info: Font shape `T1/ptm/bx/n' in size <12> not available
(Font) Font shape `T1/ptm/b/n' tried instead on input line 203.
[4]
File: image1M.eps Graphic file (type eps)
<image1M.eps>
Overfull \hbox (23.37625pt too wide) in paragraph at lines 225--227
[][]
[]
File: image0_11M.eps Graphic file (type eps)
<image0_11M.eps>
Overfull \hbox (62.5225pt too wide) in paragraph at lines 231--233
[][]
[]
LaTeX Warning: `h' float specifier changed to `ht'.
[5]
Package amsmath Warning: Foreign command \atopwithdelims;
(amsmath) \frac or \genfrac should be used instead
(amsmath) on input line 275.
[6]
Overfull \hbox (12.15599pt too wide) in paragraph at lines 283--291
[][]
[]
[7]
File: salt.eps Graphic file (type eps)
<salt.eps> [8]
Overfull \hbox (19.42992pt too wide) detected at line 383
[] \OT1/cmr/m/n/10 = [] + (4\OML/cmm/m/it/10 :\OT1/cmr/m/n/10 29\OML/cmm/m/it/1
0 Fgc \OMS/cmsy/m/n/10 ^^@ \OT1/cmr/m/n/10 3\OML/cmm/m/it/10 :\OT1/cmr/m/n/10 9
5) \OMS/cmsy/m/n/10 ^^A []\OT1/cmr/m/n/10 10[] [][[][]] + 9\OML/cmm/m/it/10 :\O
T1/cmr/m/n/10 40 \OMS/cmsy/m/n/10 ^^A []\OT1/cmr/m/n/10 10[]([][[][]])[])
[]
File: Owczarzy2.eps Graphic file (type eps)
<Owczarzy2.eps>
File: Owczarzy3.eps Graphic file (type eps)
<Owczarzy3.eps>
File: Owczarzy1.eps Graphic file (type eps)
<Owczarzy1.eps> [9] [10]
Overfull \hbox (60.35985pt too wide) in paragraph at lines 546--549
\T1/pcr/m/n/10 recherche / unites / neubiomol / meltinghome . html$ \T1/ptm/m/n
/10 and at $\T1/pcr/m/n/10 https : / / sourceforge .
[]
[11]
LaTeX Font Info: Try loading font information for OMS+ptm on input line 573.
(/automount/nfs7_vol-vol6/research-software/Linux/opt/stow/texlive/2007/texmf-d
ist/tex/latex/psnfss/omsptm.fd
File: omsptm.fd
)
LaTeX Font Info: Font shape `OMS/ptm/m/n' in size <10> not available
(Font) Font shape `OMS/cmsy/m/n' tried instead on input line 573.
Overfull \hbox (0.82664pt too wide) in paragraph at lines 589--595
\T1/ptm/m/n/10 the HTML in-ter-face to melt-ing. Thanks to Ni-rav Mer-chant, Ta
e-joon Kwon, Leo Schalk-
[]
[12] [13] [14] [15] [16] (./melting.aux) )
Here is how much of TeX's memory you used:
1492 strings out of 94074
19375 string characters out of 1150984
69439 words of memory out of 15000000
4783 multiletter control sequences out of 10000+50000
28350 words of font info for 37 fonts, out of 1200000 for 2000
645 hyphenation exceptions out of 8191
27i,11n,20p,453b,238s stack positions out of 10000i,500n,6000p,200000b,5000s
Output written on melting.dvi (16 pages, 37164 bytes).
|