1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119
|
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
<!--Converted with LaTeX2HTML 2002-2-1 (1.71)
original version by: Nikos Drakos, CBLU, University of Leeds
* revised and updated by: Marcus Hennecke, Ross Moore, Herb Swan
* with significant contributions from:
Jens Lippmann, Marek Rouchal, Martin Wilck and others -->
<HTML>
<HEAD>
<TITLE>Contents</TITLE>
<META NAME="description" CONTENT="Contents">
<META NAME="keywords" CONTENT="DeveloppersGuide">
<META NAME="resource-type" CONTENT="document">
<META NAME="distribution" CONTENT="global">
<META HTTP-EQUIV="Content-Type" CONTENT="text/html; charset=iso-8859-1">
<META NAME="Generator" CONTENT="LaTeX2HTML v2002-2-1">
<META HTTP-EQUIV="Content-Style-Type" CONTENT="text/css">
<LINK REL="STYLESHEET" HREF="DeveloppersGuide.css">
<LINK REL="next" HREF="node2.html">
<LINK REL="previous" HREF="DeveloppersGuide.html">
<LINK REL="up" HREF="DeveloppersGuide.html">
<LINK REL="next" HREF="node2.html">
</HEAD>
<BODY >
<DIV CLASS="navigation"><!--Navigation Panel-->
<A NAME="tex2html44"
HREF="node2.html">
<IMG WIDTH="37" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="next"
SRC="/usr/share/latex2html/icons/next.png"></A>
<A NAME="tex2html42"
HREF="DeveloppersGuide.html">
<IMG WIDTH="26" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="up"
SRC="/usr/share/latex2html/icons/up.png"></A>
<A NAME="tex2html36"
HREF="DeveloppersGuide.html">
<IMG WIDTH="63" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="previous"
SRC="/usr/share/latex2html/icons/prev.png"></A>
<BR>
<B> Next:</B> <A NAME="tex2html45"
HREF="node2.html">Introduction</A>
<B> Up:</B> <A NAME="tex2html43"
HREF="DeveloppersGuide.html">MELTING - development guide</A>
<B> Previous:</B> <A NAME="tex2html37"
HREF="DeveloppersGuide.html">MELTING - development guide</A>
<BR>
<BR></DIV>
<!--End of Navigation Panel-->
<BR>
<H2><A NAME="SECTION00010000000000000000">
Contents</A>
</H2>
<!--Table of Contents-->
<UL CLASS="TofC">
<LI><A NAME="tex2html46"
HREF="node2.html">Introduction</A>
<LI><A NAME="tex2html47"
HREF="node3.html">Package layout</A>
<LI><A NAME="tex2html48"
HREF="node4.html">How to add new approximative formulas</A>
<LI><A NAME="tex2html49"
HREF="node5.html">How to add new thermodynamic model</A>
<LI><A NAME="tex2html50"
HREF="node9.html">How to create a new duplex structure</A>
<LI><A NAME="tex2html51"
HREF="node10.html">How to add new nucleic acids</A>
<LI><A NAME="tex2html52"
HREF="node11.html">How to add new corrections for Na, Mg, K, Tris, DMSO and/or formamide</A>
<UL>
<LI><A NAME="tex2html53"
HREF="node12.html">New ion correction</A>
<LI><A NAME="tex2html54"
HREF="node13.html">New sodium equivalence formula</A>
<LI><A NAME="tex2html55"
HREF="node14.html">New DMSO and formamide corrections</A>
</UL>
<BR>
<LI><A NAME="tex2html56"
HREF="node15.html">How to add new ion and denaturing agent species</A>
<UL>
<LI><A NAME="tex2html57"
HREF="node16.html">New ion species</A>
<LI><A NAME="tex2html58"
HREF="node17.html">New denaturing agent species or other species</A>
</UL>
<BR>
<LI><A NAME="tex2html59"
HREF="node18.html">How to change the default textitMelting options</A>
<LI><A NAME="tex2html60"
HREF="node19.html">XML Files</A>
<UL>
<LI><A NAME="tex2html61"
HREF="node20.html">General information</A>
<LI><A NAME="tex2html62"
HREF="node21.html">List of existing nodes and attributes</A>
<LI><A NAME="tex2html63"
HREF="node28.html">what to change if you add new subnodes or new attributes</A>
</UL>
<BR>
<LI><A NAME="tex2html64"
HREF="node29.html">How to change the default ion corrections</A>
</UL>
<!--End of Table of Contents-->
<P>
<P>
<BR><HR>
<ADDRESS>
Computational Neurobiology
2009-08-24
</ADDRESS>
</BODY>
</HTML>
|