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<H2><A NAME="SECTION00082000000000000000">
New sodium equivalence formula</A>
</H2>
<P>
<SPAN CLASS="textbf">1)</SPAN> Create a new class (in the melting.ionCorrection.sodiumEquivalence package) which implements
the SodiumEquivalenceMethod interface or, if it is adapted, which extends the SodiumEquivalent
class in the melting.ionCorrection.sodiumEquivalence package.
<BR>
<BR>
If you just implement the SodiumEquivalenceMethod interface, you have to implement the public methods
<SPAN CLASS="textit">double computeSodiumEquivalent(double Na, double Mg, double K, double Tris, double dNTP)</SPAN> and
<SPAN CLASS="textit">boolean isApplicable(HashMap<String, String> options)</SPAN>.
<BR>
<BR>
The first is important to compute a sodium equivalence depending on the ions entered by the user.
The second method is important to define the conditions of application of the sodium equivalent formula.
<BR>
<BR>
<P>
The SodiumEquivalent is a base implementation for sodium equivalence computation
If you extend SodiumEquivalent, you have to override the public method <SPAN CLASS="textit">boolean isApplicable(HashMap<String, String> options)</SPAN>
to define the conditions of application of the sodium equivalence.
The public method <SPAN CLASS="textit">double computeSodiumEquivalent(double Na, double Mg, double K, double Tris, double dNTP)</SPAN>
has to be implemented to compute the sodium equivalence.
<BR>
<BR>
<P>
<SPAN CLASS="textbf">2)</SPAN> Register the sodium equivalence name and the class which represents it in the RegisterMethods
class (melting.configuration package).
You have to add into the function <SPAN CLASS="textit">private void initialiseNaEqMethods()</SPAN> of RegisterMethods
this following line :
<P>
<PRE>
private void initialiseNaEqMethods(){
[...]
NaEqMethod.put("sodiumEquivalence-Name", Class-Name.class);
}
</PRE>
<P>
<SPAN CLASS="textbf">3)</SPAN> Don't forget to add a <SPAN CLASS="textit">private static String</SPAN> instance variable in your class. This
String represents the correction formula you used to compute the sodium equivalent concentration
and must be printed if the verbose mode is required by the user.
<P>
<PRE>
// Create a private static String which represents the
// sodium equivalence formula.
private static String equivalenceFormula = "formula";
[...]
// To print the article reference of the sodium equivalence
// formula if the verbose mode is required.
OptionManagement.meltingLogger.log(Level.FINE, "article
reference of the formula");
// To print the correction formula (the private static String)
OptionManagement.meltingLogger.log(Level.FINE,
equivalenceFormula);
[...]
}
</PRE>
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<ADDRESS>
Computational Neurobiology
2009-08-24
</ADDRESS>
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