1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22
|
Description: Replace deprecated distutils.version with packaging.version
Author: Harish Chavre<harrych_1@yahoo.com>
--- a/metaphlan/metaphlan.py
+++ b/metaphlan/metaphlan.py
@@ -23,7 +23,7 @@
import time
import random
from collections import defaultdict as defdict
-from distutils.version import LooseVersion
+from packaging.version import parse
from glob import glob
from subprocess import DEVNULL
import argparse as ap
@@ -947,7 +947,7 @@
# run. *
# George Weingart 05/22/2017 george.weingart@mail.com *
#**********************************************************************************************
- if LooseVersion(biom.__version__) < LooseVersion("2.0.0"):
+ if parse(biom.__version__) < parse("2.0.0"):
biom_table = biom.table.table_factory(
data,
sample_ids,
|