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Source: metaphlan
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
python3,
dh-python,
pandoc,
bowtie2,
python3-setuptools,
python3-biopython <!nocheck>
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/metaphlan
Vcs-Git: https://salsa.debian.org/med-team/metaphlan.git
Homepage: https://github.com/biobakery/MetaPhlAn
Rules-Requires-Root: no
Package: metaphlan
Architecture: all
Depends: ${python3:Depends},
${misc:Depends},
metaphlan2-data,
python3-biom-format,
python3-msgpack,
python3-pandas,
bowtie2
Conflicts: metaphlan2
Provides: metaphlan2
Replaces: metaphlan2
Description: Metagenomic Phylogenetic Analysis
MetaPhlAn is a computational tool for profiling the composition of
microbial communities (Bacteria, Archaea and Eukaryotes) from
metagenomic shotgun sequencing data (i.e. not 16S) with species-level.
With the newly added StrainPhlAn module, it is now possible to perform
accurate strain-level microbial profiling.
.
MetaPhlAn relies on ~1.1M unique clade-specific marker genes (the latest
marker information file mpa_v31_CHOCOPhlAn_201901_marker_info.txt.bz2
can be found here) identified from ~100,000 reference genomes (~99,500
bacterial and archaeal and ~500 eukaryotic), allowing:
.
* unambiguous taxonomic assignments;
* accurate estimation of organismal relative abundance;
* species-level resolution for bacteria, archaea, eukaryotes and
viruses;
* strain identification and tracking
* orders of magnitude speedups compared to existing methods.
* metagenomic strain-level population genomics
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