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#!/usr/bin/magml
# Metview Macro
# **************************** LICENSE START ***********************************
#
# Copyright 2013 ECMWF. This software is distributed under the terms
# of the Apache License version 2.0. In applying this license, ECMWF does not
# waive the privileges and immunities granted to it by virtue of its status as
# an Intergovernmental Organization or submit itself to any jurisdiction.
#
# ***************************** LICENSE END ************************************
#
#---------------------------------------
# Define global parameters
#---------------------------------------
global VDF_FILE=""
global OUTPUT_DIR=""
global WORK_DIR=""
global LOG_FILE=""
global STEP_NUMBER=-1
global SURF_PARAMS=""
global UPPER_PARAMS=""
global VERTICAL_GRID=""
global ELEVATION_PARAM=""
global MIN_VERTICAL="0"
global MAX_VERTICAL="0"
global VDF_LEVEL=""
global AREA=""
global GRID=""
global INPUT_GRB=nil
global DATE_LST=nil
global LEV_LST=nil
global LEV_TYPE=""
global LON_WEST=0
global LON_EAST=0
global LAT_NORTH=0
global LAT_SOUTH=0
global NX=0
global NY=0
global NZ=0
global REVERT_LAT=0
global REVERT_LON=0
global errH=0
global infoH=0
#--------------------------------
# The vapor setup command
#--------------------------------
global VAPOR_SETUP_CMD=". $MV_VAPOR_BIN/vapor-setup.sh"
#----------------------------------------------------
#The exe to convert grib into raw binary for vapor
#----------------------------------------------------
global TORAW_EXE=getenv("METVIEW_BIN") & "/gribToVapor"
#---------------------------------------------------------------
# Read arguments
#---------------------------------------------------------------
#Get arguments
global ARGS
ARGS=arguments()
global CURRENT_ARG_INDEX=1
if count(ARGS) = 0 then
log_fail("No arguments specified!")
end if
print("Arguments: ",ARGS)
#Get output dir
OUTPUT_DIR=ARGS[1]
WORK_DIR=OUTPUT_DIR
#Get vdf filename
VDF_FILE=nextArg() & ".vdf"
#Get vdf check mode
val=nextArg()
doCheck=0
if val = "1" then
doCheck=1
if exist(VDF_FILE) then
log_info("VDF file already exists! No conversion is performed!")
stop()
end if
end if
#Get vdf refinement level
VDF_LEVEL=nextArg()
#Get vertical grid params
VERTICAL_GRID=nextArg()
if VERTICAL_GRID = "LAYERED" then
ELEVATION_PARAM=nextArg()
MIN_VERTICAL=nextArg()
MAX_VERTICAL=nextArg()
end if
#Get interpoltaion params
val=nextArg()
doInterpolate=0
if val = "1" then
doInterpolate=1
AREA=parse(nextArg(),"/")
GRID=parse(nextArg(),"/")
end if
#Get step number
STEP_NUMBER=number(nextArg())
#Get parameter list
SURF_PARAMS=parse(nextArg(),"/")
UPPER_PARAMS=parse(nextArg(),"/")
#Get working dir
WORK_DIR=nextArg()
#Get input files
inputMode=nextArg()
if inputMode = "ICON" then
INPUT_GRB=nil
while hasNextArg() do
INPUT_GRB=INPUT_GRB & read(nextArg())
end while
else
log_fail("InputMode=" & inputMode & " not implemented!")
end if
#---------------------------------------
#Log input parameters
#---------------------------------------
log_info("Input arguments --->")
log_info(tab & "VDF_FILE=" & VDF_FILE)
log_info(tab & "OUTPUT_DIR=" & OUTPUT_DIR)
log_info(tab & "SURF_PARAMS=" & listToString(SURF_PARAMS))
log_info(tab & "UPPER_PARAMS=" & listToString(SURF_PARAMS))
log_info(tab & "VERTICAL_GRID=" & VERTICAL_GRID)
if VERTICAL_GRID = "LAYERED" then
log_info(tab & "ELEVATION_PARAM=" & ELEVATION_PARAM)
log_info(tab & "MIN_VERTICAL=" & MIN_VERTICAL)
log_info(tab & "MAX_VERTICAL=" & MAX_VERTICAL)
end if
if doInterpolate = 1 then
log_info(tab & "Interpolate to AREA=" & listToString(AREA) & " GRID=" & listToString(GRID))
end if
log_info(tab & "STEP_NUMBER=" & STEP_NUMBER)
log_info(tab & "VDF_LEVEL=" & VDF_LEVEL)
#---------------------------------------
# Check directories
#---------------------------------------
if not(exist(OUTPUT_DIR)) then
if shell("mkdir -p " & OUTPUT_DIR) <> 0 then
print("Could not create output directory!")
print("Shell command failed: mkdir -p " & OUTPUT_DIR)
fail()
end if
end if
if not(exist(WORK_DIR)) then
if shell("mkdir -p " & WORK_DIR) <> 0 then
print("Could not create working directory!")
print("Shell command failed: mkdir -p " & WORK_DIR)
fail()
end if
end if
#------------------------------------
# Interpolation
#------------------------------------
#Should be done only for the required fields
if doInterpolate = 1 then
INPUT_GRB=read(
data : INPUT_GRB,
area: AREA,
grid: GRID
)
end if
#------------------------------------
# Get vertical structure
#------------------------------------
getVertical()
#------------------------------------
# Get dates and times
#------------------------------------
getDateTime()
#------------------------------------
# Get geography
#------------------------------------
getGeography()
#------------------------------------
# Sorting
#------------------------------------
if LEV_TYPE = "ml" or LEV_TYPE = "pl" then
INPUT_GRB=sort(INPUT_GRB,["param","date","time","step","levelist"],["<","<","<","<",">"])
# #Ig=sort(INPUT_GRB,"parameter")
# #INPUT_GRB=sort(INPUT_GRB)
else
INPUT_GRB=sort(INPUT_GRB,["param","date","time","step","levelist"],["<","<","<","<","<"])
end if
#------------------------------------
# Check vertical parameters
#------------------------------------
if VERTICAL_GRID = "LAYERED" then
prepareElevation()
end if
#-------------------------
# Create the vdf file
#-------------------------
createVdf()
#-------------------------
# Process 2D params
#-------------------------
log_info("Processing 2D params --->")
loop v in SURF_PARAMS
log_info(tab & "param: " & v)
g=read(
data : INPUT_GRB,
levtype: "sfc",
param: v
)
if g =nil then
log_fail("No data found for param: " & v)
end if
varName=checkVarName(v,"2D")
processVar(g,varName,"2D")
end loop
#-------------------------
#Process 3D params
#-------------------------
log_info("Processing 3D params --->")
loop v in UPPER_PARAMS
log_info(tab & "param: " & v)
g=read(
data : INPUT_GRB,
levtype: LEV_TYPE,
param: v
)
if g =nil then
log_fail("No data found for param: " & v)
end if
varName=checkVarName(v,"3D")
processVar(g,varName,"3D")
end loop
stop(0)
#======== Functions ===================================
#=======================================================
# Read the all the validity dates for the first available
# variable. The result is stored in DATE_LST
#=======================================================
function getDateTime()
log_info("Check dates --->")
par=SURF_PARAMS[1]
g=read(data : INPUT_GRB, param: par)
DATE_LST=nil
loop fg in g
if STEP_NUMBER = -1 or count(DATE_LST) < STEP_NUMBER then
vd=grib_get_long(fg,"validityDate")
vt=grib_get_long(fg,"validityTime")
d=(date: vd,time: vt)
if count(DATE_LST) =0 then
DATE_LST = DATE_LST & [d]
else
found = 0
loop item in DATE_LST
if item["date"] = d["date"] and
item["time"] = d["time"] then
found = 1
end if
end loop
if found = 0 then
DATE_LST = DATE_LST & [d]
end if
end if
end if
end loop
log_info(tab &"Validity dates:")
for i=1 to count(DATE_LST) do
log_info(tab & i & ") date=" & DATE_LST[i].date & ", time=" & DATE_LST[i].time)
end for
#print("dates")
#print(DATE_LST)
end getDateTime
#=======================================================
# Read the all the level related parameters from the first
# upper level parameter.
#=======================================================
function getVertical()
log_info("Check vertical --->")
par=UPPER_PARAMS[1]
if par = "lnsp" then
if count(UPPER_PARAMS) < 2 then
log_fail("No upper level params specified!")
end if
par=UPPER_PARAMS[2]
end if
g=read(data : INPUT_GRB, param: par)
levType="sfc"
cnt=1
while levType = "sfc" and cnt <> count(g) do
levType=grib_get_string(g[cnt],"levelType")
cnt=cnt+1
end while
if levType = "sfc" then
log_fail("No vertical level is found for param: " & par)
end if
#Set the level type
LEV_TYPE=levType
#Generate the level list
loop fg in g
lev=grib_get_string(fg,"level")
if count(LEV_LST) = 0 then
LEV_LST=LEV_LST & [lev]
else if lev not in LEV_LST then
LEV_LST=LEV_LST & [lev]
end if
end loop
NZ=count(LEV_LST)
log_info(tab & "Level type: " & LEV_TYPE)
log_info(tab & "Level num: " & NZ)
levStr=""
for i=1 to count(LEV_LST) do
if i = 1 then
levStr=levStr & LEV_LST[i]
else
levStr=levStr & "," & LEV_LST[i]
end if
end for
log_info(tab & "Levels: " & levStr)
end getVertical
function getGeography()
log_info("Check geography ---> ")
g=INPUT_GRB[1]
lat1=grib_get_double(g,"latitudeOfFirstGridPointInDegrees")
lat2=grib_get_double(g,"latitudeOfLastGridPointInDegrees")
if lat1 > lat2 then
LAT_NORTH=lat1
LAT_SOUTH=lat2
else
LAT_NORTH=lat2
LAT_SOUTH=lat1
end if
lon1=grib_get_double(g,"longitudeOfFirstGridPointInDegrees")
lon2=grib_get_double(g,"longitudeOfLastGridPointInDegrees")
#log_info(tab & "lon1/lon2: " & lon1 & "/" &lon2)
if lon1 > 180 then
lon1 = lon1-360
end if
if lon2 > 180 then
lon2 = lon2-360
end if
#log_info(tab & "lon1/lon2: " & lon1 & "/" &lon2)
if lon1 < lon2 then
LON_WEST=lon1
LON_EAST=lon2
else
LON_WEST=lon2
LON_EAST=lon1
end if
NX=grib_get_long(g,"Ni")
NY=grib_get_long(g,"Nj")
log_info(tab & "nx/ny: " & NX & "/" & NY)
log_info(tab & "N/W/S/E: " & LAT_NORTH & "/" & LON_WEST & "/" & LAT_SOUTH & "/" & LON_EAST)
#log_info(tab & "revert lat: " & REVERT_LAT)
#log_info(tab & "revert lon: " & REVERT_LON)
end getGeography
#====================================================
# Check and modify an original parameter names to
# fit it to VAPOR's needs
#====================================================
function checkVarName(varName,varType:string)
if varName = "z" then
if varType = "3D" then
return "ELEVATION"
else if varType = "2D" then
return "HGT"
end if
end if
numberLst=["0","1","2","3","4","5","6","7","8","9"]
if type(varName) = "number" then
return "v" & string(varName)
else
s = substring(varName,1,1)
if s in numberLst then
return "v" & varName
end if
end if
return varName
end checkVarName
#====================================================
# Create the VDF file
#====================================================
function createVdf()
#Write al the timestamps into a ascii file.
#vdfcreate will need it!
fName=WORK_DIR & "/tsfile.txt"
f=file(fName)
for i=1 to count(DATE_LST) do
vdate=DATE_LST[i]["date"]
vtime=DATE_LST[i]["time"]
write(f,vdate & vtime, newline)
end for
f=0
#Generate 2d parameter string for vdfcreate
par2D=""
for i=1 to count(SURF_PARAMS) do
if i=1 then
par2D=checkVarName(SURF_PARAMS[i],"2D")
else
par2D=par2D & ":" & checkVarName(SURF_PARAMS[i],"2D")
end if
end for
#Generate 2d parameter string for vdfcreate
par3D=""
for i=1 to count(UPPER_PARAMS) do
if i=1 then
par3D=checkVarName(UPPER_PARAMS[i],"3D")
else
par3D=par3D & ":" & checkVarName(UPPER_PARAMS[i],"3D")
end if
end for
fLog=WORK_DIR & "/log.txt"
if VERTICAL_GRID = "LAYERED" then
gridType="layered"
else
gridType="regular"
if LEV_TYPE = "ml" or LEV_TYPE = "pl" then
MIN_VERTICAL="-" & LEV_LST[1]
MAX_VERTICAL="-" & LEV_LST[count(LEV_LST)]
else
MIN_VERTICAL=LEV_LST[1]
MAX_VERTICAL=LEV_LST[count(LEV_LST)]
end if
end if
log_info("---> Create VDF file with vdfcreate!")
#Create VDF file
geoFactor=111177
cmd=VAPOR_SETUP_CMD & ";" &
" cd " & OUTPUT_DIR & ";" &
" vdfcreate -dimension " & NX & "x" & NY & "x" & NZ &
" -gridtype " & gridType &
" -mapprojection \"+proj=latlong +ellps=sphere\" " &
" -level " & VDF_LEVEL &
" -numts " & count(DATE_LST) &
# " -usertimes tsfile.txt " &
" -extents " & LON_WEST*geoFactor & ":" &
LAT_SOUTH*geoFactor & ":" &
MIN_VERTICAL & ":" &
LON_EAST*geoFactor & ":" &
LAT_NORTH*geoFactor & ":" &
MAX_VERTICAL &
" -vars3d " & par3D &
" -vars2dxy " & par2D &
" " & VDF_FILE &
" > " & fLog
print(cmd)
if shell(cmd) <> 0 then
log_error("vdfcreate failed!")
log_error("command: " & cmd)
#log_error("output " & read(fLog))
fail()
else
log_info("command: " & cmd)
end if
end createVdf
function toGrib(g:fieldset,ts:number)
#Save grib file
grbFile=WORK_DIR & "/tmp_" & ts & ".grib"
write(grbFile,g)
end toGrib
#====================================================
# Write one timestep of one parameter to vdf/vdc
#====================================================
function toVdf(g:fieldset,varName:string,ts:number,varType:string)
#Save grib file
#grbFile=WORK_DIR & "/" & varType & "_" & varName & "_" & ts & ".grib"
#grbFile=WORK_DIR & "/tmp_" & ts & ".grib"
grbFile=WORK_DIR & "/tmp.grib"
write(grbFile,g)
#log_info(" grib: " & varName & " " & count(g))
mv_bin=getenv("METVIEW_BIN")
#Generate the raw binary file
#rawFile=WORK_DIR & "/" & varType & "_" & varName & "_" & ts & ".raw"
#rawFile=WORK_DIR & "/tmp_" & ts & ".raw"
rawFile=WORK_DIR & "/tmp.raw"
cmd=TORAW_EXE & " " & grbFile & " " & rawFile
ret= shell(cmd)
if ret <> 0 then
log_error("Conversion of GRIB to raw binary failed!")
log_fail("command: " & cmd)
end if
#Add raw binary to vdf/vdc
cmd=VAPOR_SETUP_CMD & ";" &
" cd " & OUTPUT_DIR & ";" &
" raw2vdf -ts " & ts &
" -varname " & varName &
" " & VDF_FILE &
" " & rawFile
ret= shell(cmd)
if ret <> 0 then
log_error("Adding raw binary to VAPOR failed!")
log_fail("command: " &cmd)
end if
end toVdf
function processVar(g:fieldset,varName:string,varType:string)
for i=1 to count(DATE_LST) do
vdate=DATE_LST[i]["date"]
vtime=DATE_LST[i]["time"]
log_info(tab & "--> processing: " & vdate & " " & vtime)
gRes=nil
loop f in g
if grib_get_long(f,"validityDate") = vdate and
grib_get_long(f,"validityTime") = vtime then
gRes=gRes & f
end if
end loop
#Write to vdf
toVdf(gRes,varName,i-1,varType)
end for
end processVar
function prepareElevation()
log_info("Checking vertical parameters --->")
g=read(data : INPUT_GRB,
param: ELEVATION_PARAM,
levtype: LEV_TYPE)
if g = nil then
#log_fail("Elevation parameter=" & ELEVATION_PARAM & "not found in input data!")
if LEV_TYPE = "ml" and ELEVATION_PARAM = "z" then
log_info(tab & "Geopotential is not present! Need to be computed or model levels")
computeElevation_ml()
else
log_fail("Elevation parameter=" & ELEVATION_PARAM & " not found in input data!")
end if
end if
if ELEVATION_PARAM not in UPPER_PARAMS then
UPPER_PARAMS = UPPER_PARAMS & [ELEVATION_PARAM]
end if
end prepareElevation
function computeElevation_ml()
t=read(data : INPUT_GRB,
param: "t",
levtype: LEV_TYPE)
q=read(data : INPUT_GRB,
param: "q",
levtype: LEV_TYPE)
lnsp=read(data : INPUT_GRB,
param: "lnsp",
levtype: LEV_TYPE,
level: 1)
zs=read(data : INPUT_GRB,
param: "z",
levtype: "sfc")
if t=nil then
log_fail("Parameter=t not found on model levels! Height of model levels cannot be computed!")
else if q = nil then
log_fail("Parameter=q not found on model levels! Height of model levels cannot be computed!")
else if lnsp = nil then
log_fail("Parameter=lnsp not found! Height of model levels cannot be computed!")
else if zs = nil then
log_fail("Surface geopotential is not found! Height of model levels cannot be computed!")
end if
gRes=nil
for i=1 to count(DATE_LST) do
vdate=DATE_LST[i]["date"]
vtime=DATE_LST[i]["time"]
tAct=nil
loop f in t
if grib_get_long(f,"validityDate") = vdate and
grib_get_long(f,"validityTime") = vtime then
tAct=tAct & f
end if
end loop
qAct=nil
loop f in q
if grib_get_long(f,"validityDate") = vdate and
grib_get_long(f,"validityTime") = vtime then
qAct=qAct & f
end if
end loop
lnspAct=nil
loop f in lnsp
if grib_get_long(f,"validityDate") = vdate and
grib_get_long(f,"validityTime") = vtime then
lnspAct=lnspAct & f
end if
end loop
zsAct=nil
loop f in zs
if grib_get_long(f,"validityDate") = vdate and
grib_get_long(f,"validityTime") = vtime then
zsAct=zsAct & f
end if
end loop
gRes=gRes & geopotential_on_ml(tAct,qAct,lnspAct,zsAct)
end for
INPUT_GRB = INPUT_GRB & gRes
end computeElevation_ml
function nextArg()
CURRENT_ARG_INDEX=CURRENT_ARG_INDEX+1
if CURRENT_ARG_INDEX <= count(ARGS) then
return ARGS[CURRENT_ARG_INDEX]
else
return ""
end if
end nextArg
function hasNextArg()
if CURRENT_ARG_INDEX < count(ARGS) then
return 1
else
return 0
end if
end hasNextArg
function log_fail(txt:string)
log_error(txt)
fail()
end log_fail
function log_error(txt:string)
if errH=0 then
errH=file(WORK_DIR & "/m_err.txt")
end if
write(errH,txt,newline)
end log_error
function log_info(txt:string)
if infoH=0 then
infoH=file(WORK_DIR & "/m_log.txt")
end if
write(infoH,txt,newline)
end log_info
function geopotential_on_ml (T_fs:fieldset, q_fs:fieldset, lnsp_fs:fieldset, zs_fs:fieldset)
Rd = 287.06
g = 9.80665
#Do some basic checking on the input data -
#only check the first field of each fielset for efficiency
gridtype_t = grib_get_string(T_fs[1], 'gridType')
gridtype_q = grib_get_string(q_fs[1], 'gridType')
gridtype_l = grib_get_string(lnsp_fs[1], 'gridType')
gridtype_z = grib_get_string(zs_fs[1], 'gridType')
if (gridtype_t = 'sh' or gridtype_q = 'sh' or gridtype_l = 'sh' or gridtype_z = 'sh') then
log_fail("geopotential_on_ml: fields must be gridded, not spectral")
end if
#How many levels are we computing?
levelSize = count(T_fs)
bottomLevel = grib_get_long(T_fs[1], 'level')
topLevel = grib_get_long(T_fs[levelSize], 'level')
if bottomLevel < topLevel then
log_fail("geopotential_on_ml: fields are not sorted in descending order according to model levels")
end if
#print("levels: ",bottomLevel," ",topLevel)
zs = values(zs_fs) # extract the data for this field as a vector
lnsp = values(lnsp_fs) # extract the data for this field as a vector
pv = grib_get_double_array(lnsp_fs, 'pv') # for computing pressures at model levels
sp = exp(lnsp) # surface pressure
z_h = zs # orography
#Get the coefficients for computing the pressures
#e.g. L-91: A=1..92, B=93..184
pv = grib_get_double_array(lnsp_fs, 'pv')
totalLevNum=count(pv)/2-1
A = pv[1, totalLevNum+1]
B = pv[totalLevNum+2, 2*totalLevNum+2]
if totalLevNum <> bottomLevel then
log_fail("geopotential_on_ml: bottom level should be " & totalLeveNum & " instead of " & bottomLevel)
end if
#A = pv[1, levelSize+1] #e.g. L-91: A=1..92, B=93..184
#B = pv[levelSize+2, levelSize+levelSize+2]
z_f = z_h # output vector
z_out_fs = nil # output fieldset - the end result
#Compute the bottom pressure (on half-levels)
#initialise to the lowest numbered level
Ph_levplusone = (A[totalLevNum+1] + (B[totalLevNum+1] * sp))
# We want to integrate up into the atmosphere, starting at the ground
# so we start at the lowest level (highest number) and keep
# accumulating the height as we go.
# See the IFS documentation:
# http://www.ecmwf.int/research/ifsdocs/DYNAMICS/Chap2_Discretization4.html
# For speed and file I/O, we perform the computations with vectors instead
# of fieldsets.
for lev=bottomLevel to topLevel by -1 do
levIdx=bottomLevel-lev+1 #levelSize-lev+1
print("level: ",lev," ",levIdx)
# we assume that the data are in (numerically) descending level order - check if true
T_level = grib_get_long(T_fs[levIdx], 'level')
q_level = grib_get_long(q_fs[levIdx], 'level')
if (T_level <> lev) then
log_fail ('T field index ', levIdx, ' should be level ', lev, ' but it is ', T_level)
else if (q_level <> lev) then
log_fail ('q field index ', levIdx, ' should be level ', lev, ' but it is ', q_level)
end if
q = values(q_fs[levIdx]) # extract the data for this field as a vector
T = values(T_fs[levIdx]) # extract the data for this field as a vector
# quick check for data consistency
if ((count(q) <> count(T)) or
(count(q) <> count(sp)) or
(count(q) <> count(z_h))) then
errmsg = 'mvl_geopotential_on_ml: T, Q, LNSP and Z, must have the same number of grid points (they have ' &
count(T) & ', ' & count(q) & ', ' & count(sp) & ' and ' & count(z_h) & ' respectively).'
log_fail(errmsg)
end if
T = T*(1.+0.609133*q) # compute moist temperature
q = 0 # free the memory for 'q'
# compute the pressures (on half-levels)
Ph_lev = (A[lev] + (B[lev] * sp))
if lev = 1 then
dlogP = log(Ph_levplusone/0.1) # Ph[lev] is zero, so don't divide by it
alpha = log(2)
else
dlogP = log(Ph_levplusone/Ph_lev)
dP = Ph_levplusone-Ph_lev
alpha = 1 - Ph_lev/dP*dlogP
end if
TRd = T*Rd
T = 0 # free memory for 'T'
# z_f is the geopotential of this full level
# integrate from previous (lower) half-level z_h to the full level
z_f = z_h + (TRd*alpha)
# z_h is the geopotential of 'half-levels'
# integrate z_h to next half level
z_h = z_h + (TRd*dlogP)
# store the result (z_f) in a field and add to the output fieldset
# (add it to the front, not the end, because we are going 'backwards'
# through the fields)
out_field = set_values(T_fs[levIdx], z_f)
out_field = grib_set_string(out_field, ['shortName', "z"])
out_field = grib_set_long(out_field, ['generatingProcessIdentifier',128,
'level', lev])
z_out_fs = z_out_fs &out_field
Ph_levplusone = Ph_lev # store for the next iteration, will be equivalent to (A[lev+1] + (B[lev+1] * sp))
end for
return z_out_fs
end geopotential_on_ml
function listToString(lst)
s=""
for i=1 to count(lst) do
if i = 1 then
s=s & lst[i]
else
s=s & "," & lst[i]
end if
end for
return s
end listToString
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