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/*
* © Copyright 1996-2012 ECMWF.
*
* This software is licensed under the terms of the Apache Licence Version 2.0
* which can be obtained at http://www.apache.org/licenses/LICENSE-2.0.
* In applying this licence, ECMWF does not waive the privileges and immunities
* granted to it by virtue of its status as an intergovernmental organisation nor
* does it submit to any jurisdiction.
*/
#include "odb.h"
#include "mars.h"
#include "eckit/eckit_version.h"
#include "eckit/exception/Exceptions.h"
#include "eckit/filesystem/PathName.h"
#include "eckit/io/Buffer.h"
#include "eckit/io/Length.h"
#include "eckit/io/SeekableHandle.h"
#include "eckit/utils/StringTools.h"
#include "metkit/odb/OdbToRequest.h"
#include "odc/api/Odb.h"
#include <algorithm>
#include <memory>
#include <set>
#include <string>
using namespace eckit;
using namespace metkit::odb;
boolean is_part_of_mars_language(const char* n) {
static request* archive = NULL;
const char* s = NULL;
if (!archive) {
request* r = mars_language();
while (r && !EQ(r->name, "ARCHIVE"))
r = r->next;
if (r == NULL) {
marslog(LOG_EROR, const_cast<char*>("ARCHIVE request not found in language. OOOPPPSSS!!!"));
marsexit(1);
}
archive = r;
}
if ((s = get_value(archive, n, 0)) != NULL)
return true;
return false;
}
err odb_to_request_from_file(request* r, const char* fileName) {
try {
marslog(LOG_DBUG, const_cast<char*>("odb_to_request_from_file: fileName = %s."), fileName);
PathName pn(fileName);
if (!pn.exists()) {
marslog(LOG_EROR, (char*)"oda_to_request_from_file: file '%s' does not exist.", (char*)fileName);
return TOO_SHORT_ERR;
}
if (!pn.size()) {
marslog(LOG_EROR, (char*)"oda_to_request_from_file: file '%s' empty.", fileName);
return TOO_SHORT_ERR;
}
// Extract the MARS keywords needed to archive this data
bool singleRequest = true;
bool constantColumns = true;
OdbToRequest o2r("archive", singleRequest, constantColumns);
metkit::mars::MarsRequest rq;
try {
std::unique_ptr<DataHandle> dh(pn.fileHandle());
dh->openForRead();
std::vector<metkit::mars::MarsRequest> requests = o2r.odbToRequest(*dh);
ASSERT(requests.size() == 1);
rq = requests[0];
}
catch (Exception& ex) {
return HYPERCUBE_ERROR;
}
// Convert the metkit mars rq to one for MARS client
std::ostringstream ss_rq;
rq.dump(ss_rq, "", "");
Log::debug() << "odb_to_request_from_file: " << ss_rq.str() << std::endl;
request* n = string2request(ss_rq.str().c_str());
if (!n) {
marslog(LOG_EROR, "Error creating a MARS request from data");
return TOO_SHORT_ERR;
}
reqmerge(r, n);
free_all_requests(n);
}
catch (Exception& ex) {
marslog(LOG_EROR, (char*)"Error making a request from file %s\n", ex.what());
marslog(LOG_EROR, (char*)"Exception ignored");
return TOO_SHORT_ERR;
}
return NOERR;
}
typedef std::map<std::string, std::set<std::string> > Parameters;
Parameters parameters(request* r) {
Parameters ret;
for (parameter* p = r->params; p; p = p->next) {
std::string parameterName = p->name;
size_t n = count_values(r, p->name);
if (n == 0) {
marslog(LOG_EROR, (char*)"parameters: no values of param '%s'", p->name);
ASSERT(n != 0);
}
std::set<std::string> values;
for (size_t i = 0; i < n; ++i)
values.insert(get_value(r, p->name, i));
ret[parameterName] = values;
}
return ret;
}
bool set_values_compare(const std::set<std::string>& s1, const std::set<std::string>& s2) {
if (s1.size() != s2.size())
return false;
for (const auto& v : s1) {
if (s2.find(v) != s2.end())
continue;
if (s2.find(StringTools::upper(v)) != s2.end())
continue;
if (s2.find(StringTools::lower(v)) != s2.end())
continue;
return false;
}
return true;
}
err odb_compare_attributes_of_first_request(request* first, request* second) {
typedef Parameters P;
P firstParams = parameters(first);
P secondParams = parameters(second);
for (P::iterator it = firstParams.begin(); it != firstParams.end(); ++it) {
const std::string& paramName = it->first;
const std::set<std::string>& values = it->second;
P::iterator jt = secondParams.find(paramName);
if (jt == secondParams.end())
jt = secondParams.find(StringTools::upper(paramName));
if (jt == secondParams.end())
jt = secondParams.find(StringTools::lower(paramName));
if (jt == secondParams.end()) {
marslog(LOG_EROR, (char*)"odb_compare_attributes_of_first_request: second request has no param '%s'", paramName.c_str());
return -1;
}
const std::set<std::string>& otherValues = jt->second;
if (!set_values_compare(values, otherValues)) {
std::stringstream ss;
if (values.size() == 1 && otherValues.size() == 1) {
ss << "Values of '" << paramName << "' differ: " << *values.begin() << " <> " << *otherValues.begin();
marslog(LOG_EROR, (char*)"odb_compare_attributes_of_first_request: %s", ss.str().c_str());
}
else {
marslog(LOG_EROR, (char*)"odb_compare_attributes_of_first_request: values for param '%s' differ", paramName.c_str());
std::ostream_iterator<std::string> out(ss, ", ");
std::set_symmetric_difference(values.begin(), values.end(), otherValues.begin(), otherValues.end(), out);
marslog(LOG_EROR, (char*)"odb_compare_attributes_of_first_request: values present in one of the sets, but not in the other: %s",
ss.str().c_str());
}
return -1;
}
}
return NOERR;
}
/// A simple wrapper class to make an existing FILE* look like a DataHandle
class CloneCopyStdFileHandle : public DataHandle {
public:
CloneCopyStdFileHandle(FILE* f) :
f_(f) {}
DataHandle* clone() const override {
return new CloneCopyStdFileHandle(f_);
}
void print(std::ostream& s) const override {
s << "CloneCopyStdFileHandle()";
}
Length openForRead() override { return 0; }
void openForWrite(const Length&) override {}
void openForAppend(const Length&) override {}
void close() override{};
long read(void* out, long length) override {
return ::fread(out, 1, length, f_);
}
long write(const void* buffer, long length) override {
return ::fwrite(buffer, 1, length, f_);
}
Offset seek(const Offset& offset) override {
return ::fseek(f_, offset, SEEK_SET);
}
private:
FILE* f_;
};
class FilteredRestrictedODBHandle : public DataHandle, public HandleHolder {
public: // methods
FilteredRestrictedODBHandle(DataHandle* dh) :
HandleHolder(dh),
frame_(),
frameData_(0),
pos_(0) {}
~FilteredRestrictedODBHandle() override {}
Length openForRead() override {
return handle().openForRead();
}
void print(std::ostream& s) const override {
s << "FilteredRestrictedODBHandle(" << handle() << ")";
}
void close() override { handle().close(); }
bool canSeek() const override { return false; }
DataHandle* clone() const override {
return new FilteredRestrictedODBHandle(handle().clone());
}
void getNextFrame() {
while (true) {
// We have these inside the loop so that we don't end up storing lots of data in
// memory if we have a long sequence of restricted (i.e. skipped) frames
//
// n.b. if we stored the frameData_ in the object rather than the frame object
// we could have these on the stack, rather than belonging to the Reader
// (and thus having ownership shared with the Frame).
PeekHandle* peek_in = new PeekHandle(handle());
SeekableHandle* seekable_in = new SeekableHandle(peek_in);
seekable_in->openForRead();
odc::api::Reader reader(seekable_in, /* aggregated */ false);
frame_ = reader.next();
if (!frame_)
break;
// Do we have a column called restricted? Otherwise assume unrestricted
if (frame_.hasColumn("restricted")) {
bool onlyConstantColumns = false;
odc::api::Span restrictedSpan = frame_.span({"restricted"}, onlyConstantColumns);
std::set<long> restrictedValues = restrictedSpan.getIntegerValues("restricted");
if (restrictedValues.size() == 1) {
if (restrictedValues.find(0) != restrictedValues.end()) {
// Unrestricted data;
break;
}
else {
// Restricted data. Discard.
// Ensure entire frame has been read --> next Seekable handle will work.
Buffer discard = frame_.encodedData();
continue;
}
}
else {
// A mix of restricted/unrestricted data
frame_ = frame_.filter("SELECT * WHERE restricted = 0 OR restricted IS NULL");
break;
}
}
else {
// Not restricted, so we can use this data
break;
}
}
}
long read(void* out, long length) override {
if (pos_ == Length(frameData_.size())) {
pos_ = 0;
getNextFrame();
if (frame_) {
frameData_ = frame_.encodedData();
}
else {
frameData_ = Buffer(0);
return 0;
}
}
ASSERT(pos_ < Length(frameData_.size()));
long readlength = std::min<long>(length, (frameData_.size() - pos_));
::memcpy(out, &frameData_[pos_], readlength);
pos_ += readlength;
return readlength;
}
private: // members
odc::api::Frame frame_;
Buffer frameData_;
Offset pos_;
};
long long odb_filter(const char* sql, FILE* fin, FILE* fout, long long total_to_read) {
try {
marslog(LOG_INFO, const_cast<char*>("odb_filter: sql = '%s', total_to_read = %lld"),
((sql == 0) ? "NULL" : sql),
total_to_read);
if (total_to_read == 0)
return 0;
// Loop over each of the frame individually
// --> We consider the restricted nature of any observations before we apply
// any user-specified filters
std::unique_ptr<DataHandle> input_dh(new CloneCopyStdFileHandle(fin));
if (!mars.privileged) {
input_dh.reset(new FilteredRestrictedODBHandle(input_dh.release()));
}
// Is an SQL filter specified (just do this once)
std::string sqlstring;
if (sql && strlen(sql) != 0) {
sqlstring = StringTools::unQuote(StringTools::trim(sql));
}
// If non-null apply SQL filter, and save into output DH
CloneCopyStdFileHandle output_dh(fout);
odc::api::filter(sqlstring, *input_dh, output_dh);
marslog(LOG_DBUG, const_cast<char*>(" => odb_filter"));
}
catch (Exception& ex) {
marslog(LOG_EROR, (char*)"Error in odb_filter %s\n", ex.what());
return -1;
}
// TODO: make sure the below is true
return total_to_read;
}
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