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Source: mhap
Section: science
Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Afif Elghraoui <afif@debian.org>
Build-Depends:
debhelper (>= 9),
javahelper,
maven-debian-helper,
libmaven-dependency-plugin-java,
default-jdk-headless,
libcommons-compress-java,
libfastutil-java,
libguava-java,
jaligner,
libssw-java,
Standards-Version: 3.9.8
Homepage: http://mhap.readthedocs.org/en/stable/
Vcs-Git: https://anonscm.debian.org/git/debian-med/mhap.git
Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/mhap.git
Package: mhap
Architecture: all
Depends:
${misc:Depends},
# java:Depends adds a dependency on
# default-jre, which pulls in many unnecessary libraries
# for graphics
# ${java:Depends},
default-jre-headless,
jarwrapper,
libcommons-compress-java,
libfastutil-java,
libguava-java,
jaligner,
libssw-java,
Description: locality-sensitive hashing to detect long-read overlaps
The MinHash Alignment Process (MHAP--pronounced MAP) is a
reference implementation of a probabilistic sequence overlapping
algorithm. Designed to efficiently detect all overlaps between noisy
long-read sequence data. It efficiently estimates Jaccard similarity
by compressing sequences to their representative fingerprints
composed on min-mers (minimum k-mer).
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