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=============================================================================
MinHash Alignment Process (MHAP): a probabilistic sequence overlap algorithm.
=============================================================================
=================
Overview
=================
MHAP (pronounced MAP) is a reference implementation of a probabilistic
sequence overlapping algorithm. Designed to efficiently detect all overlaps
between noisy long-read sequence data. It efficiently estimates Jaccard similarity
by compressing sequences to their representative fingerprints composed on min-mers (minimum k-mer).
MHAP is included within the `Canu <http://canu.readthedocs.org/>`_ assembler. Canu can be downloaded `here <https://github.com/marbl/canu/releases>`_.
Contents:
.. toctree::
:maxdepth: 2
installation
quickstart
utilities
contact
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