1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41
|
Source: mhap
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Afif Elghraoui <afif@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper (>= 11~),
javahelper,
maven-debian-helper,
libmaven-dependency-plugin-java,
default-jdk-headless,
libcommons-compress-java,
libfastutil-java,
libguava-java (>= 19),
jaligner,
libssw-java
Standards-Version: 4.2.1
Vcs-Browser: https://salsa.debian.org/med-team/mhap
Vcs-Git: https://salsa.debian.org/med-team/mhap.git
Homepage: http://mhap.readthedocs.org/en/stable/
Package: mhap
Architecture: all
Depends: ${misc:Depends},
# java:Depends adds a dependency on
# default-jre, which pulls in many unnecessary libraries
# for graphics
# ${java:Depends},
default-jre-headless,
jarwrapper,
libcommons-compress-java,
libfastutil-java,
libguava-java (>= 19),
jaligner,
libssw-java
Description: locality-sensitive hashing to detect long-read overlaps
The MinHash Alignment Process (MHAP--pronounced MAP) is a
reference implementation of a probabilistic sequence overlapping
algorithm. Designed to efficiently detect all overlaps between noisy
long-read sequence data. It efficiently estimates Jaccard similarity
by compressing sequences to their representative fingerprints
composed on min-mers (minimum k-mer).
|