File: ChangeLog

package info (click to toggle)
mia 2.4.3-5
  • links: PTS, VCS
  • area: main
  • in suites: stretch
  • size: 14,964 kB
  • ctags: 18,491
  • sloc: cpp: 153,197; python: 1,254; sh: 311; xml: 127; makefile: 27; csh: 24; ansic: 9
file content (592 lines) | stat: -rw-r--r-- 26,916 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
2.4.3

   * m/c/utils.cc: Always define PATH_MAX when it is not defined by 
     system headers
   * Correct spellings
   * Replace use of boost::regex by std::regex

2.4.2

    * correct installed headers

2.4.1

    * Add additional search path for MathJax
    * Correct type in VistaIO 
    * Change file load handling to throw when file is not available 

2.4.0

    * Add support for a repeatable command line option; Closes: #183
    * Add interface for pixel type filter conversion test; Closes:  #5
    * Work on enabling compiling against DCMTK that requires ICONV
    * Make it compile on FreeBSD
    * Add new filters
    * Add tests and improve code coverage
    * Improve fuzzy-segmentation algorithms by using tested code
      (kmeans, probability estimation)
    * Add support for piping through the vista plugin interface
    * correct type of sparse histogram bin value
    * Add new program that applies a 2D local cmeans segmentaion
    * Correct Coverity issues
    * Clean up code of similarity_profiles and add test
    * Add test for 2D image comparison
    * Add a sparse histogram implementation
    * Remove the code for the so-called auto-ICA estimation
    * install lxml in travis via pip to work around travis-ci/travis-ci#4948
    * Remove need to use a dummy file for plug-in and test creation
    * disable unused registration code in build
    * Prepare mia for compilation with boost-1.60
    * Correct compilation with g++-6
    * Correct copyright
    * remove obsolete create_2dinterpolation_factory function
    * remove the create_XXinterpolation_factory functions
    * Correct reading of 24-bit RGB BMP images
    * Update bmp image io to support compressed 4bit pixel reading
    * Correct critical point and matrix eigenvalue/vector handlinG
    * Remove all optimization from coverage build
    * Remove the src/ directory from coveralls check, can't be tested in time
    * Add possibility to use installed mathjax files
    * Add generic get_minmax function to images
    * Correct code to prepare for auto-threshholding
    * Enable compilation with libxml++3.0 and libxml-2.6
    * Start implementing switchable ICA implementations.
    * Use c++11 threads as default, instead of TBB
    * Change reading nifti oriention
    * Update CXDBitImage to not use vector<bool>
    * Read nifti files without applying the slope transformation
    * Add SpacingBetweenSlices Attribute to DCMTK IO
    * More code parallelization
    * Add const-correctnes to the gsl::matrix class and its iterators. Closes [tickets:#169]


2.2.7

    * Correct tests that fail on arm64, armhf and ppc64el
    * Make the m/2d/mlv use always the same random seed

2.2.6

    * Correct pkg-config dependencies
	* Change label type in fifof to unsigned int

2.2.5

   Bug Fixes:
    * Fix SSE2 alignment bugs on 32 bit x86
    * Correct test to use BOOST_CHECK_CLOSE for floating point numbers
    * Fix a series of Coverity reported bugs
      - Change the CXMLElement to track ist children
      - fix past-end access in histograms
      - check for empty histogram in new CMeans implementation
    * Correct explicite instanciation of 3diterator, clang++ needed this

    Other fixes

    * Remove outdate documentation files
    * Correct licenses

2.2.4

  New features:

  * Add programs for
      - cmeans on sparse input data
      - combining an abitrary number of images with an comutative operation
      - estimating a bounding box around the data in an image
      - applying a deformabale model to a mesh
      - evaluating statistics in a masked area of an 3d image
  * Add mesh filters
      - remove triangles based on normal direction
      - select largest connected mesh part
      - add a scale value taken from a 3D image to each vertex

  * enable use of parallel gzip/xz in IO if available
  * Add image filters
      - 3D labelmap filter
      - 3D re-orientation filter re-enabled
      - 2D maxflow/mincut segmentation filter 
      - 2D sobel filter  
  
  * Cleanups
      - remove eigen3 from public interface 
      - remove libxml++ from public interface (Closes: #178)
      - remove boost/filesystem from public interface (Closes: #177)
      
  * Coverity fixes 
  * Implement 2d gradient normalized cross correlation 
  * Parallize some filter for speedup 
  * Add new bounded parameter type that replaces ranged parameter 
  * Add cmeans class with different initializers given by plug-ins 
  * correct evaluation of normalization filter in nonlinearregistration 
    (Closes #185) 
  *  Remove cost name test from s/2dmany-to-one.cc (Related to #186)
  * Add a 3D to image drawtool
  * remove time stamp from man pages for reproducible builds
  * Lots of minor changes and fixes (see git log for details) 

2.2.3

  New features:

  * Add some more speceliyed 3D image transformations
  * Install the documentation tools
  * Add nipype interfaces to all command line tools
  * Add (localized) normalized cross correlation as cost function

2.2.2

  Fixes:

  * #165 throw exception where "exit" was used before
  * Add boost_system to required link libraries in *.pc files
  * Reduce the number of explicitely libraries used from VTK
  * vtkmash.cc: Add explicit cast to make it compile with clang++
  * test_cmdlineparser: Correct failing test if NDEBUG is defined

2.2.1

  * fixes for potential bugs discovered by Coverity
  * src/2dmyoica-full.cc: fixes and error in the order of
     parameters passed

2.2.0

  New features:

  * Major ABI changes
  * Add support for HDF5 and NIFTI1 IO
  * Support for masked cost functions in voxel based image registration
  * Use Eigen3 for  the 3D matrix eigenvalue/eigenvector evaluation
  * More C++11, minimal requirement is now g++ >= 4.7
  * Keep track of orientations
  * Add perfusion motion compensation programs that are specifically
    designed to use a global reference even if the algorithm doesn't
    dictate this
  * automatically set C++11 compiler flag by cmake

  Fixes for tracked issues:

 * #4 add 2D/3D filters that actually run a combiner,
 * #12 add basic support for loading and stroring nifti
 * #14 load and store ImageOrientationPatient and ImagePositionPatient related
 * #19 Add positional information to C3DTransform::const_iterator
 * #49 Parallize the 3D scale filter
 * #57 Add parameter type that can take a vector of coma separated values.
 * #76 Remove the old divcurl penalty interface in 2D Closes
 * #90 Add voxel/pixel size attribute to vector field
 * #100 Make the 3D image combiner similar to the 2D combiner
 * #108 Change segmentation set IO to possible make use of plug-ins
 * #117 Add support to query minimal image size for transformations
 * #123 Correct handling of ica instance when RV/LV classification fails in all cases,
 * #124 Add attribute to indicate the pixel size is from the imager
 * #125 Make slicelocation and slicespacing non-obligatory
 * #126 Correct plug-in file suffix mapping for 2D and 3D images.
 * #127 Correct documentation and output to refer to 2D data.
 * #128 Add program to convert multi-record 2D image to 3D image

 * #129 Move plug-ins that are configurable to the addons source tree
 * #132 add 2D normalized local cross correaltion, see
 * #135 Read from created file name instead of in_filename.
 * #136 Add a normalization parameter to the spline penalty,
 * #138 Handle compressed file extension properly when selecting the IO plugin.
 * #139 Do not throw when opening the HDF5 file fails
 * #140 add property flag for IO piping
 * #141 Add attribute IO to the available 2d/3d transform IO backends
 * #143 Fix zero boundary condition handling
 * #144 Parallelize the prefiltering in the 3D interpolator
 * #145 make sure the interpolator output range always includes zero

 * #147 Add function to override interpolator once.
 * #152 add 3 label-voting downscale filter
 * #153 Add traits for the range iterators
 * #156 add additional flags to to the XML document creation CStringParameter,
 * #157 split range iterator in version with and without boundary flags.
 * #158 Consistently implement the lncc metric for masked and unmasked images
 * #159 Add option to chain filters into one entity.
 * #160 Add a new gradient descent implementation with some step adjustment

 Additional fixes:

  * make all source files lowercase
  * correct compilation with visibility=hidden
  * handles signed and unsigned pixel values in DICOM
  * let the xml-help write to a file instead of stdout
  * Correct default suffix for 2D transforms.
  * add attributes to boost::serialization transform IO
  * Add the _1 quaternion that corresponds to no rotation
  * Add printing of CAttributedData for testing
  * Add an affine matrix with OpenGL like layout
  * add a program to evaluate the pixel wise maximum intensity of  number of images
  * add support for setting the minimum number of digits in the output file names.
  * Add SSD cost function with automasking baswed on intensity thresholds.
  * Add xz to the possible compressors/decompressors that can be invoked on the fly.
  * Add a 3D distance transform filter
  * add label distance evaluation program
  * add a min-frequency parameter to the classifier in the ICA perfusion analysis
  * update to use supprt VTK >= 6.0 
  * add photometric interpretation and correct acquisition time saving in DICOM 
   	
2.0.13

  Fixes for tracked bugs:

  * #138 Handle compressed file extension properly when selecting the IO plugin.
  * #143 Fix zero-fill boundary condition handling
  * #144 Parallelize the prefiltering in the 3D interpolator



  * 2dimageregistration: Exit if no cost functions are given
  * 3dgetimage: add support for setting the minimum number of
                digits in the output file names.
  * factoryplugins: throw error if a factory plugin is not found
  * make the basic interpolator operator in 3D thread save

2.0.12

  Fixes for tracked bugs:

  * #49:  Parallize the 3D scale filter
  * #125: Make slicelocation and slicespacing non-obligatory
  * #127: Correct documentation and output to refers to 2D data.
  * #128: Add program to convert multi-record 2D image to 3D image

  Partial fixes:

  * #126: (partially) add override for do_get_preferred_suffix()
  * #129: (partial) move optional plug-ins that depend on external
          libraries to /addons

  Additional fixes:

  * Fix 147 issues reported by Coverty http://scan.coverity.com
  * Dissmiss 37 issues reported by Coverty als intentional or false positive

  * wavelet slope statistics will now throw an exception if the slope is too short
  * set the C++11 flag correctly in UNIX
  * Correct strides when writing to the 2D output tensor field.

2.0.11

  Fixes of tracked bugs:

  * #106: mia-2dmyomilles - save feature images also when no segmentation is requested
  * #122: boundary-condition plug-ins - remove width parameters since it is set internally
  * #123: Correct handling of ICA instance when RV/LV classification fails for all numbers of components

  Partial fixes:

  * #104: improve some of the command line parameter descriptions

2.0.10

  Fixes of tracked bugs:

  * #3   add a image load plugins to filters
  * #11  make the author information for the programs a possible program specific parameter
  * #79 (experimental) remove the need to provide "<>" delimiters when reading 2d/3d vectors and don't write them
  * #28 Add a filter that applies a transformation (2d/3d)
  * #91 Fix regression by reintroducing the parameter 's' in the scale filter
  * #93 Properly interpret the pixel value signedness when loading DICOM images
  * #94 3d crop filter: change the parameter 'begin' to 'start' to conform with the 2D implementation
  * #96 Add functions to TDelayedParameter to check key availability
  * #97 Propper filling of output image in scale filters
  * #98 (experimental) Dicomio: add  support for reading multiframe dicom images
  * #102 Correct a race condition in the image filtering when downscaling.
  * #114 mia/3d/transform/rigid.cc lock access to m_matrix_valid, making code thread save
  * #116 src/2dmyopgt-nonrigid.cc Add a missing coma in the transform creation.

  Partial fixes:

  * #14  core: add patient position enum and string-enum translator
  * #89 (experimental) vtkio: change the method of storing vector field data from structured grid to structured points
  * #101 [23]d/transform/spline.cc Check for the range/c-rate ratio in spline transfromations and give better error messages
  * #103 2dimagefilterstack.cc: Add options to select first and last image of the series of images to be filtered
  * #106 2dmyomilles.cc save the coefficient matrix also if no segmentation was requested
  * #113 (needs testing): correct race conditions in parallel code

  Additional fixes:

  *  3D filters: correct buggy string in morphometric shape definition
  *  3D transform: deduct the output image size from the deformation field range instead of the input image size
  *  Dicom: Remove required flag from the MediaStorageSOPClassUID tag
  *  3D datafield: add functions to test whether the data hold by a field is unique (required for parallelization)
  *  Add mia/core/statistics.hh to the installed files.
  *  check precicion of pixel values in jpg and throw if it is larger than 8.
  *  remove some attribute translators that don't make sense

  new image filters

  * 2D load, transform
  * 3D load, transform, morphological thinning

  new notable command line tools

  * mia-3dcrispsegment - evaluate a segmentation by first using fuzzy-cmeans and then classify based on the highest class probability
  * mia-3dlandmarks-distance (experimental) evaluate the Euclidean distance between corresponding 3D landmarks
  * mia-3dlandmarks-transform (experimental) transform landmarks by applying some 3D transform

2.0.9

  Fixes of tracked bugs:


  * fix 58: mia-fluid3d: Add parallelization
  * fix 52,59,60,61,62: Add 2D Rotation only transformation and centerparameter to rigid and rotation
  * fix 74: Tests: Fix failing tests on PowerPC
  * fix 82: core: Add padding to the arrays in splineparzenmo
  * fix	83: core: Add more tests to the Array-vector wrapper to ensure its proepr working
  * fix	84: AnalyzeIO: Discard voxel-offset bytes when reading the image data.
  * fix	85: IO: Add MetaImage IO support based on VTK.
  * fix	86: Build: Test for Altivec and SSE and discard modules that require it
	    if not available, Closes Debian Bug #705384
  * fix 87: core: Set default numbers of threads to 1 on powerpc is the Intel threading building blocks
	    version is < 4.1u2 (Interface version 6101), and warn user if she sets it higher
	    This is a workaround for Debian Bug  #705385
  * fix 88: core:  add the --threads option to the options that are always provided

  Additional fixes and changes:

  * add a program to binarily combine two 3d images
  * correct the evalation of the gradient-from vectorfield evaluation
  * correct the gradient from vector field translation
  * correct the handling of zero-argument flags to satisfy the address sanitizer of LLVM
  * Parallelize some more code
  * Correct the libinclude path in the pkg-config files
  * Relax some tests that compare floating point evaluation to pass tests on i386 were
	  the limited amount of available registers results in a lower accuracy. 
	  Closes Debian Bug #705383


2.0.8

  Fixes of tracked bugs:

 * fix #69: GSL simplex optimizer now interprets parameter epsilon as simplex size termination parameter
 * fix #68: Add obtion to revert the triangle winding at surface creation.
 * fix #65 #66, #67: Store the transformation vector field as transformation in fluid registration
 * fix #55: isoscale filter now scales to the exact requested voxel size
 * fix #54: Call cost.reinit() before evaluating the value.
 * fix #53: make handler initialization thread save,
 * fix #51: proper relebaling in stack filters
 * fix #50: correct test for changed coefficient field size
 * fix #46: Spline transformation now takes the penalty term as parameter (experimental)
 * fix #41: correct tensor file header.
 * fix #39: vtk-IO (exterimental):  images (XML and legacy), mesh, and vector field
 * fix #8:  Add the interface to store attributes with transformations

  Additional fixes and changes:

 * fix compiling with clang-3.2
 * fix error in voxel size scaling when (down)scaling 3D
 * fix the transform upscaling to be based on the reference image size
 * Fix the preferred suffix specification for vector field storing
 * fix dependecies in miacore.pc to include TBB and BLAS
 * fix comparison of entries and reading of the histogram.
 * fix test for required option to use the method 'is_required()' instead of the enum 'required'.
 * fix compilation errors with clang 3.2 that enforce more standard conformance
 * fix stackfilter label join map evaluation,  distance evaluation, label remap evaluation

 * add xml scheme for xml-help output
 * add test to make sure the scaling is to a positive size, even if the voxel size carries negative values.

 * add initial implementation of voxel-to-isometric scaling
 * add support for unsigned short and unsigned int to vistaio

 * DICOM change the dicom loading interface, to allow default values for entries that should be
   in the DICOM file and are needed for slice sorting in 3D data
 * DICOM reading: When the locations show a negative Z-scale, then flip the output image to have a positive scale.
 * DICOM  also read the instance number for slice sorting
 * update copyright year
 * update BLAS handling
 * update filter help for meshes

 * enable section name based file names for userref
 * remove empty option groups from --help-xml output
 * remove obsolete VTK imageio implementation
 * remove the requirement of equal-sized images in rigid registration, because it is not needed
 * rename mesh distance program for consitency
 * remove the vistaio files and always use the system provided version 

2.0.7
  * change build dependencies to cmake 2.8.5 because of GNUInstallDirs
  * change installation directories to support multiarch
  * add test for STRICT_DEPENDENCIES to nlopt and xsltproc

2.0.6
  * move to new vistaio interface, minimum required external vistaio is now
	 version 2.1.14
  * add a new 3D rotation only transformation
  * fix regressions introduced with 2.0.4

2.0.4
  * Intrusive changes
    - change file nameing scheme of the 2D and 3D files
    - change program description type and adapt all programs
    - change the virtual method interface of 2D and 3D transformations
    - eliminate fatcost related classes and plug-ins, use Fullcost
    - remove the THROW macro in favour of the variadic template based create_exception function
    - library SO version bump

  * Added programs and functions:
    - evaluate 2D and 3D transformation quantities
    - 2D/3D transformation to strain matrix program
    - mesh-to-mask distance for out-of core mask processing
    - distance transform evaluation function
    - add RGB image output (jpg, bmp, png)
    - 3D trackpoint class
    - new segmentation XML format and drawing method
    - mesh filtering program
    - program for out-of-core distance evaluation between masks
    - program to create a norm image of the cost function gradient after translating it by means of a transformation
    - estimating of percetual range reduction of histogram
    - filter facility for meshes and a scaling filter
    - gray scale jpeg support
    - io handler links to parameter descriptions
    - missing header to installation
    - more tests for 3D point tracking
    - option to spline based mutual infomation to eliminate outliers at the extrems of the histogram
    - plugin for RGB<unsigned char> image saving
    - possibility to store a prefered reference index and     - tests accordingly
    - program to combine three gray scale 8-bit images to one color image
    - program to extract an iso-surface from a stack of images
    - program to get a volume from a segmentation series
    - program to track 2D pixel movement defined by a 2D transform
    - some parallelization
    - storing the prefered_reference parameter to the series registration programs
    - support for plug-in hints in string parameters
    - support for the attributes in the segmentation set version 2
    - support for writing information about the supported file types for IO plugins
    - supported data types and file extensions to IO plugin docu
    - test case for 3d derivative at abitrary point
    - test cases for more weights?
    - test drawing version 2 segmentations and correct for closed/open line sections
    - test for derivative_at and correct code
    - test for distance from real function
    - test for moving the pixels
    - test for reading
    - test for reading version 2 segmentation
    - test for reading/writing version 2 segmentation
    - test to see if all attributes are reordered
    - tests for base class of new penalty model
    - 2D trackpoint implementation
    - algorithm for evaluating distances without getting the whole distance slice
    - marching triangles mesh extraction program
    - mesh filter
    - C2DTransform: add derivative evaluation at abitrary coordinates, closes #2
    - for vector based command line parameters: if the input size != 0, then expect exatly the corresponding number of coma separated values
    - slopestatistics: add test for avarage level change

  * Bug fixes:
    - correct install filess: meanvar.hh
    - 3d/image.cc:  evaluating the cost at lower resolutions would actually deform  the high resolution image
    - Correct bug in normal evaluation on meshes
    - Make most of the code compile with clang++ 3.1, g++-4.6.3 stdc++ std::atomic still conflicts, now uses tbb::atomic
    - SegFrame: correct section test to set is_open properly
    - cost correction to the iso-surface extraction
    - to correct the number of output slices in FIFO filter
    - correct bad mapping in label joining
    - correct build order and tests
    - correct build with clang and g++ 4.6.3
    - correct gradient evaluation at the image boundaries
    - correct mesh colorization to use dot product correctly
    - correct plugin-path search for new locations
    - correct preferred suffix for some IO plug-ins
    - correct spline transform initialization to fix #22
    - correct test for evaluating gradinet along the boundaries
    - correct type of C3DTransformMock
    - correct upper boundary for default unsigned short intensity range for histograms
    - histogram: correct off-by-one error in histogram tail cutting function
    - make test-history pass when compiling with -DNDEBUG
    - mia/2d/iterator.cxx correct postfix increment of range iterator
    - mia/3d/iterator.cxx correct postfix increment of range iterator


  * Other changes:
    - Change default of histogram tail cutting.
    - Correct to wavelet slope classifier to account for stronger RV enhancement and handle free-breathing
     and initial free breathing + later breathhold equally.
    - Move the estimation of LV and RV peak to the first ICA.
    - unified class to combine 2D images to 3D volumes
    - add base class for spline penalty model
    - 2D/3D transformation: add derivative_at for non-grid points
    - assert that the generic load_image function is not instanciated
    - avoid some missing return values warning by turning asserts into exceptions on release build
    - change the plugin search path type
    - clean up the load/save functions for transforms
    - code cleanup: replace THROW by variadic template and review asserts
    - copy attributes in syntetic reference creation based on ICA
    - disable gsl error handler in release builds
    - make studyid not needed when reading DICOM
    - move from anonymous enummerates to static const for pixel type traits
    - make the io-plugin know about its own suffixes
    - make the slice counter short, this should suffice for stack based distances 

  * Documentation
    - Sort members in Doxygen documentation
    - myocard intensity curve estimation: Update the reference frame help and allow that the frame
      is selected as the LV peak from the registered set. As a fallback the last frame may be used.
    - IO plugin hint to command line parameters
    - add a xml scheme for the segmentation sets
    - docu about supported extensions and data types
    - more internal linking of documentation
    - correct output for non-parameter taking plugins (i.e. IO plugins)
    - correct plug-in descriptions
    - correct the help for IO options that use the plugin-hint


2.0.3
  * version bump to reflect API changes in 3D transform
  * add more vector field conversion programs
  * remove save function and add vector field transformation
  * add a creator string to the output PNG file
  * correct bugs in the the fifo filter (thanks Matt Skinner for pointing it out)
  * add a program to track pixel movement
  * add a convertor from a 3D transform to an according vector field
  * correct docu
  * revise the error message and handling of output file type
  * properly install miamesh-*.pc

2.0.2
  * correct code to work on 32 bit
  * Correct implementation of landmarklistio test
  * Add non-SSE implementation of Divcurl
  * turn off sse implementation on non-64 bit arch
  * remove some unneeded sse code
  * update docu
  * correct bad handling of missing argument in command line parser
  * add the preferred suffix for analyze files
  * add infrastruture for axamples and a first example
  * remove StudyID from required 3D reading parameters, since it may not be available
  * add loading and saving the landmarks
  * add run_filters based on variadic templates
  * add a resize filter that can also enlarge the image and uses the center of the data as reference point

2.0.1
  * update installation of files
  * test proper reset of parameters and correct it
  * add support for 64 bit integer on 64 bit platforms
  * 2dseries2sets: correct bug that would result in empty files if output directory is the same as location of the input files
  * correct passing of attributes in filters
  * add a pc file for the mesh library
  * correct installation of pkg-config files
  * correct attribute handling in ICA reference image creation
  * Add insertion of a range of attributes
  * update  build system to silence warnings
  * update icons and desktop files
  * add menu entries for the documentation
  * add a specific boolean option
  * fix race condition in the build process
  * correct the doc installation path and remove GZIP from man page compression
  * make watch test more tolerant (still a shaky test that depends on the system load) 

2.0.0
  * docu: update doxygen generated docu
  * docu: add support for building all the documentation

2.0_pre20120305

  * library: correct compile errors with g++4.6

2.0_pre20120302 is considered to be the initial release