@String{ ieeepami 	= "IEEE Trans. Pattern Anal. Mach. Intell."}
@String{ ieeeip 	= "IEEE Trans. Image Process."}
@String{ ieeetmi 	= "IEEE Trans. Med Imag."}
@String{ jmri           = "Journal of Magn. Reson. Imag."}





@Article{thevenaz00mi,
  author = 	 {Philippe Th{\'e}venaz and  Michael Unser},
  title = 	 {Optimization of mutual information for multiresolution image registration},
  journal = 	 {ieeetmi},
  year = 	 2000,
  volume = 	 9,
  number = 	 12,
  pages = 	 {2083-2099}}

@Book{vandevoorde05,
  author = 	 {David Vandevoorde and Nicolai M. Josuttis},
  title = 	 {C++ {T}emplates - {T}he {C}omplete {G}uide},
  publisher = 	 {Addison Wesley},
  year = 	 2005}

@InProceedings{wollny11bvm,
  author = 	 {Gert Wollny and Peter Kellman and Andr{\'e}s Santos and Mar{\'i}a-Jesus Ledesma},
  title = 	 {Nonrigid Motion Compensation of Free Breathing Acquired Myocardial Perfusion Data},
  booktitle = {Bildverarbeitung {f\"ur} die Medizin 2011},
  year = 	 2011,
  editor =	 {Handels, H. and Horsch, A.and Lehmann, T. and Meinzer, H.~P.},
  series =	 {Informatik aktuell},
  address =	 {Berlin Heidelberg},
}

@Article{wollny11,
  author = 	 {G. Wollny and P. Kellman and A. Santos and M. J. Ledesma-Carbayo },
  title = 	 {Automatic Motion Compensation of Free Breathing acquired Myocardial Perfusion Data by 
                  using Independent Component Analysis},
  journal = 	 {Medical {I}mage {A}nalysis},
  year = 	 {submitted}}

@Article{MvdG+08,
  Author         = {Milles, J. and van der Geest, R.J. and Jerosch-Herold,
                   M. and Reiber, J. and Lelieveldt, B.},
  Title          = {Fully {A}utomated {M}otion {C}orrection in {F}irst-{P}ass
                   {M}yocardial {P}erfusion {MR} {I}mage {S}equences},
  Journal        = ieeetmi,
  Volume         = {27},
  Number         = {11},
  Pages          = {1611--1621},
  doi            = {10.1109/TMI.2008.928918},
  issn           = {0278-0062},
  keywords       = {biomedical MRI, cardiology, image motion analysis,
                   image registration, image sequences, medical image
                   processingMR image sequence, automated motion
                   correction, breathing protocol, cardiac perfusion
                   magnetic resonance imaging, computation speed,
                   first-pass myocardial perfusion, image quality, image
                   registration, independent component analysis, manual
                   gold standard, motion pattern, right ventricle motion,
                   time-intensity behavior, time-varying reference image,
                   two-pass registration framework},
  year           = 2008
}


@Book{bezdek91:fuzzy,
  author =	 {J. C. Bezdek and S.K. Pal},
  title = 	 {Fuzzy Models for Pattern Recognition},
  publisher = 	 {IEEE Press},
  year = 	 1991,
  address =	 {Piscataway, NJ}
}

@article{pham99fuzzy,
	author = {Pham, D.~L. and Prince,J.~L.},
	title = {{A}n adaptive fuzzy {C}-means algorithm for image segmentation in the presence of intensity inhomogeneities},
	journal = {Pattern Recognition Letters},
	year = {1999},
	volume = {20},
	pages = {57--68},
}


@Book{galassi09,
  author = 	 {M. Galassi and J. Davies and J. Theiler and B. Gough and 
                  G. Jungman and P. Alken and M. Booth and F. Rossi},
  title = 	 {{GNU} {S}cientific {L}ibrary {R}eference {M}anual},
  publisher = 	 {Network Theory Ltd.},
  year = 	 2009,
  edition = 	 {3rd}}

@Book{gonzales02:dip,
  author =	 {Rafael C. Gonzales and Richad E. Woods},
  title = 	 {Digital Image Processing},
  publisher = 	 {Tom Robbins, Pearson Education International},
  year = 	 2002,
  address =	 {Prentice-Hall inc, Upper Saddle River, New Jersay 07458},
  edition =	 {2nd}
}


@InProceedings{haber05,
  Author         = {Eldad Haber and Jan Modersitzki},
  Title          = {Beyond Mutual Information: A Simple and Robust
                   Alternative},
  BookTitle      = {Bildverarbeitung f\"ur die Medizin 2005},
  Editor         = {Hans-Peter Meinzer, Heinz Handels, Alexander Horsch
                   and Thomas Tolxdorff},
  Series         = {Informatik Aktuell},
  Pages          = {350--354},
  Publisher      = {Springer Berlin Heidelberg},
  year           = 2005
}

@InProceedings{heldmann10lsd,
  author = 	 {Heldmann, Stefan},
  title = 	 {Multimodal {R}egistration of {MR} {I}mages with a {N}ovel {L}east-squares {D}istance {M}easure},
  booktitle = {Medical Imaging 2010: Image Processing},
  year = 	 2010,
  volume = 	 7623,
  address = 	 {San Diego},
  publisher = {SPIE},
  DOI={10.1117/12.844466},
}

@Article{jkip2003,
  Author         = {Kybic, Jan and Unser, Michael},
  Title          = {Fast Parametric Elastic Image Registration},
  Journal        = ieeeip,
  Volume         = 12,
  Number         = 11,
  Pages          = {1427--1442},
  year           = 2003
}

@Misc{johnson11,
  author = 	 {Steven G. Johnson},
  title = 	 {The NLopt nonlinear-optimization package},
  howpublished = {http://ab-initio.mit.edu/nlopt},
  month = 	 {May},
  year = 	 2011}

@Article{nelder65,
  author = 	 {J.A. Nelder and R. Mead},
  title = 	 {A simplex method for function minimization},
  journal = 	 {Computer Journal},
  year = 	 1965,
  volume = 	 7,
  pages = 	 {308--313}}

@Article{perona90:aniso,
  author = 	 {P. Perona and J. Malik},
  title = 	 {Scale-space and edge detection using anisotropic diffusion},
  journal = 	 {IEEE Transactions on Pattern Analysis and Machine Interlligence},
  year = 	 1990,
  volume =	 12,
  number =	 7,
  pages =	 {629-639},
  month =	 {July}
}

@Article{sanchez05,
  Author         = "S{\'{a}}nchez Sorzano, C.{\'{O}}. and Th{\'{e}}venaz,
                   P. and Unser, M.",
  Title          = "Elastic Registration of Biological Images Using
                   Vector-Spline Regularization",
  Journal        = "{IEEE} Trans. Biomed. Eng.",
  Volume         = 52,
  Number         = 4,
  Pages          = "652--663",
  year           = 2005
}

@inproceedings{schulze94morphologybased,
    author = "Mark A. Schulze and John A. Pearce",
    title = "A Morphology-Based Filter Structure for Edge-enhancing Smoothing",
    booktitle = "{ICIP} (2)",
    pages = "530-534",
    year = "1994",
    url = "citeseer.ist.psu.edu/schulze94morphologybased.html" 
}

@Book{sutter04coding,
  author =	 {Herb Sutter and Andrei Alexandrescu},
  title = 	 {C++ Coding Standards. 101 Rules, Guidelines and Best Practices},
  publisher = 	 {Addison-Wesley Longman},
  year = 	 2004,
  address =	 {Amsterdam}
}

@Article{thev99,
  Author         = {Philippe Th\'evenaz and Michael Unser},
  Title          = {Optimization of Mutual information for multiresolution
                   image registration},
  Journal        = ieeeip,
  Volume         = 9,
  Number         = 12,
  Pages          = {2083--2099},
  year           = 2000
}

@Article{unser93,
  Author         = "Unser, M. and Aldroubi, A. and Eden, M.",
  Title          = "The {$L_{2}$}-Polynomial Spline Pyramid",
  Journal        = ieeepami,
  Volume         = "15",
  Number         = "4",
  Pages          = "364--379",
  Note           = "",
  year           = 1993
}



@Article{wollny02comput,
  Author         = {Wollny, G. and Kruggel, F.},
  Title          = {Computational cost of non-rigid registration
                   algorithms based on fluid dynamics},
  Journal        = {IEEE Transactions on Medical Imaging},
  Volume         = 11,
  Number         = 8,
  Pages          = {946-952},
  year           = 2002
}

@InProceedings{wollny08a,
  Author         = {G. Wollny and M. J. Ledesma-Carbayo and P. Kellman and
                   A. Santos},
  Title          = {{A} {N}ew {S}imilarity {M}easure for {N}on-{R}igid
                   {B}reathing {M}otion {C}ompensation of {M}yocardial
                   {P}erfusion {MRI}},
  BookTitle      = {Proc. of the 30th Int. Conf. of the {IEEE-EMBS}},
  Pages          = {3389--3392},
  Address        = {Vancouver, BC, Canada},
  year           = 2008
}

@InBook{wollny10a,
  author = 	 {G. Wollny and M. J. Ledesma-Carbayo and P. Kellman and A. Santos},
  title = 	 {New Developments in Biomedical Engineering},
  chapter = 	 {On breathing motion compensation in myocardial perfusion imaging},
  publisher = 	 {In-Teh},
  address = 	 {Vukovar, Croacia},
  year = 	 2010,
  pages = 	 {235-247}}

@Article{wollny10b,
  author = 	 {Gert Wollny and Maria J.~Ledesma-Carbayo and Peter Kellman and Andres Santos},
  title = 	 {Exploiting {Q}uasiperiodicity in {M}otion {C}orrection of {F}ree-{B}reathing
                  {M}yocardial {P}erfusion {MRI}},
  journal = 	 ieeetmi,
  year = 2010, 
  volume = 29, 
  number = 8, 
  pages = {1516 -- 1527} 
 }

@InProceedings{li09,
  author = 	 {Chao Li and Ying Sun},
  title = 	 {Nonrigid {R}egistration of {M}yocardial {P}erfusion {MRI} {U}sing {P}seudo {G}round {T}ruth},
  booktitle = {Medical Image Computing and Computer-Assisted Intervention, MICCAI 2009},
  pages = 	 {165--172},
  year = 	 2009}

@article{Li2011,
title = "{P}seudo {G}round {T}ruth {B}ased {N}onrigid {R}egistration of {M}yocardial {P}erfusion {MRI}",
journal = "Medical Image Analysis",
volume = "In Press, Accepted Manuscript",
number = "",
pages = "DOI: 10.1016/j.media.2011.02.001",
year = "2011",
note = "",
issn = "1361-8415",
doi = "DOI: 10.1016/j.media.2011.02.001",
url = "http://www.sciencedirect.com/science/article/B6W6Y-5265SGD-1/2/8da91d440a223d0c0cedad494afa9ab1",
author = "Chao Li and Ying Sun and Ping Chai",
keywords = "nonrigid registration",
keywords = "perfusion MRI",
keywords = "pseudo ground truth",
keywords = "spatiotemporal smoothness"
}


@Book{sutter05coding,
  author = 	 {Herb Sutter and Andrei Alexandrescu},
  title = 	 {{C++} {C}oding {S}tandard, 101 {R}ules, {G}uidlines, and {B}est {P}ractices},
  publisher = 	 {Addison-wesley},
  year = 	 2005,
  series = 	 {The C++ In-Depth Series},
  address = 	 {Boston}}