File: chims.NAST

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microbiomeutil 20101212%2Bdfsg1-6
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>chmraD24_7000004128191580_1-4580:4581-7682_S000428666
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.....................................................tt-ga--
t-tc-t-g-gctc-ag-aa-caaa-c-gc--tgg-c--g-gc-g-tg--c----c-t--a
ataca-t-gc-a-agt-cga-a-cggg----g-aaagc----------------------
-------------------tttc-------------------------------------
--------------ggg-t-----------------------------------------
-----------------------------------------ga-----------------
--------------gt-ac-tag-t-gg-c--gca--c-------------ggg-tgagg
-a--ac-gc-g-t-g-ga--ta-a--t-ct-g--c-c--tt-aga-g-------------
-----------------------------------------------------t-gg---
-ggg-at-aa-ct--------------------------a-g-t----------------
------cgaa-a--gatt--ag-ctaa-ta---cc-g--c-at-a----------a----
----------------g------------------------------------accac--
------------------------------------------------------------
---------------------------------------------aggagctgcggctct
a-g---------------------------------------------------------
------------------------------------------------------------
-----------------g-g-g--------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------tcaaa--g-g--------------------------------------------
------------------------------------------------------------
--------------------------------ttt-t-----------------------
------------------------------------------------------------
-----------------------------------------------t---c-g------
--------c----t-c--ta-ag-----at---g-a-----g-tcc-gcg--t-aag--a
------tt--a--g-ct-a----g---ttgg-t-g-ag-g-t----aac-gg-c-t-c-a
cca--a-gg-c-g--a-cg-a------------tct-t-t------aa-ct-g-g-tct-
g-ag----a--gg-at--g-at-c-ag-tcac-a-ctgga--a-c-tg-a-ga-c-ac-g
-g-tccaga-ctcc-tac-g--g-g-a-g-gc-a-gc-a-g-ta---gg-g-a-ata-tt
gca-c-aa-t-gg-ag--ga-a----a-c-tc-t-ga-tg-ca-gcga-cgcc-g-cg-t
---g-a-g--t--ga-t-g--a--a-g-g-cc-----tt-cg---------g-g-t-c-g
-t--a---aa-g-ctc--------tg-tc-g-c--a-ggg----ga-a--t---a-----
-----------------acacaa------------------------------t-ga-at
-gt-a-c-cctg-taag----------a------------aagg-atc-gg-c-taa---
c--t-tcgt--gcca--g-c---a--gccg---c-gg--ta-ag--ac---g--ag-gga
tcct-a-g-cg-ttgt-t-cgg-aa-tt-a--t-t--gggc-gta----aa-gcgg-at-
-g-ta-g-g-t-g------------g--c-tttg---t-aa----g-t-c-a---g-atg
-tg-a-aa-gc--cc-agg-g---------------------------------------
-----------------------------ct-c-aa------------------------
-------------------------------------------------cc-c-t-gg-a
a-g----t-g-c-a-t-t--------t--ga-t-a-c-t-g--cg--a-agc--------
------------------------------------------------------------
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-t-t-g-a-g-t-g-----tcgg---a-g-a------------g-gt-t-ac-t----ag
--aattgttg---gt--gt-a-gtg-gtgaaa-ta-cgt-agat-a--t-caaca--gg-
a-at-a-cc-gg--a--g--gc-gaa-g--g-c---g----g--g-t-aactg------g
-cc-ga------------------------------------------------------
--------ac-a-c-t--ga--ca-----ct-ga-ga--t-c-cga--aa-g-c------
--------g-tggg-gat-c-a-aaca--gg-atta-g-ata-c-----cc-t-g-gta-
g-t----c-ca--c-g-ccg-t-aaa--c-gatg-ga--tactt-----------gt--t
--g-t-tg-gaggta---------------------------------------------
---------------------------------------------tt-ga----------
------------------------------------------------------------
------------------------------------------------------------
----------------c-c-cctt--c-a-g-t-ga-c------ga--a----gc-taa-
-cg-c-g-t--t--aa-gt--a----t-ccc-gcc-t-g-gg-gag-ta---cgg-----
t-c--g-c-a-a-gat-t--aaa-actc-aaa---------gaaa-ttg-acggg-g-g-
cccg----c-a--c-a-a-GCG-GT-G--G--AT-TA-T--GT-GGT-TT-AATT-C-G-
AAG-CAAC-G-CG-C-AG-A-A-CC-TT-A-CC-TAGGC-TT-G-AA-C-T-C-------
-------CTA-C-G-------------A-AC-C-C-G--TT--G-TA-A-T-G--G-A-C
--G-G-G-G--T-GC----CC-------------------------------------G-
-CA-A------------------------------------------GG---GA----A-
--TG-TAG---T--GA--------------------------------------------
-------G-A-G-G-T-GCTG-CA-TGG-CT--GTC-GTC-A-GC-TC---G-TG-TT-G
--TGA-AA-TGT-T-GG-G-TT-AA-GT-CTCGC-AA--------C-GAG-CGC-A-ACC
-C-C-TA--TC--G-TCTG--T-T-G-C-C---A-GC-A--T------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------------TAAG----------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------T----T
-G------------G----G---C-A--CT---------------C-T-G-A-C-GA-G-
-AC-T-G-CCT--G-G------------------------------------G-T---TA
A----------------------------------C-C-A-G--G-A-GG-A--AGG-T-
-GGGG-A-TGAC-GTC--AAGT-C---CTC-A-T-G-G-C-C-CTT----AT-G--TC-T
-A-GG-GC-TA-CAC-ACGTA-A--TA--CAATG---G-CGCG-T-A--C-AGA-GG-GA
------------------------------------------------------------
--------------------------------------A-G-C-G-A--A-CTCG-C--A
---------------------------------------A-GG-G-G-----------G-
-A-G-CA---A----------A--TCT-C------A-A-AAAGC-GC-G-C-C-T-CAG-
TTC--------GGA-T-TGGAG-TC--T-GCAA-CT-C----------------------
------------------------------------------------------------
---------------G-ACTCC-A-T-G-AA-G-TT-GGAAT-CG-C-TA--G-TA-AT-
C-G-G----AGA-TC-A-G-C-------AC--GCT-CC-G-GT-G-AAT-ACGT-T-CCC
GGGCCT-TGTA----CACACCG-CCC-GTC-----A---CA--CCA-TG-GG-A--G---
TTG-T-TT-TC-ATT--T-TAA------G--A-CGT-GA-C-T-C-T-AA-C-C------
-------------------------------------------------------G-CA-
A-----------------------------------------------------------
-------------------------------------------GG-G--GG-A--G---A
G-CGT--CT--ACA-G----T-GGG-AG-CGA------------------------TG--
ACT-GGGG-TG.................................................
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>chmraD19_S000378387_1-5075:5076-7682_S000016146
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.........................................................a--
---c-t---gctc-ag-ga-cgaa-c-gc--tgg-c--g-gc-g-tg--c----c-t--a
ataca-t-gc-a-agt-cga-g-cgg---------a-c---ag-a---------------
---------------aggg-ag--------------------------------------
--------------ctt-g-----------------------------------------
-----------------------------------------ctc-ccg------------
-------ga--t--gt--t--ag-c-gg-c-gg-a--c-------------ggg-tgagt
-a--ac-ac-g-t-g-gg---taa--c-ct-g--c-c-tgt--aa-g-------------
-----------------------------------------------------a-ct---
-ggg-at-aa-ctc-------------------------c-g-g----------------
-------gaa-a---ccg-gag-ctaa-ta---cc-g--g-at-a---------------
------------------g-t--t-c-ct--t----------------gaa---cc----
------------------------------------------------------------
---------------------------------------------------------g-c
a-t---------------------------------------------------------
------------------------------------------------------------
-----------------g-g-t--tc----------------a--a-gga---t------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------gaaa--g-a-c-gg-----------t---------------------------
------------------------------------------------------------
--------------------------------ttc-g-----------------------
------------------------------------------------------------
-------------------------------------g--c--tg--t---c-a------
--------c----t-t---a-ca-g---at---g-g-----a-ccc-gcg--g-cgc--a
------tt--a--g-ct-a----g---ttgg-t-g-gg-g-t----aat-gg-c-t-c-a
cca--a-gg-c-g--a-cg-a------------tgc-g-t------ag-cc-g-a-cct-
g-ag----a--gg-gt--g-at-c-gg-ccac-a-ctggg--a-c-tg-a-ga-c-ac-g
-g-cccaga-ctcc-tac-g--g-g-a-g-gc-a-gc-a-g-ta---gg-g-a-atc-tt
ccg-c-aa-t-gg--ac-ga-a----a-g-tc-t-ga-cg-ga-gcaa-cgcc-g-cg-t
---g-a-g--t--ga-t-g--a--a-g-g-tt-----tt-cg---------g-a-t-c-g
-t--a---aa-g-ctc--------tg-tt-g-t--t-agg----ga-a--g---aacaag
t---gcga-ga----g--t--aa-c---t----g-----ct-c-g-c-acc-tt-ga-cg
-gt-a-c-ct-a-ac-c---------ag-----------aaagc-cac-gg-c-taa---
c--t-acgt--gcca--g-c---a--gccg---c-gg--ta-at--ac---gt-ag-gtg
-gca-a-g-cg-ttgt-c-cgg-aa-tt-a--t-t--gggc-gta----aa-gggc-tc-
-g-ca-g-g-c-g------------g--t-tt-c-t-t-aa----g-t-c-t---g-atg
-tg-a-aa-gc--cc-ccg-g---------------------------------------
-----------------------------ct-c-aa------------------------
-------------------------------------------------cc-g-g-gg-a
g------g-gtc-a-t-t--------g--ga-a-a-c-t-g-gga--a-a-c--------
------------------------------------------------------------
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-t-t-g-a-g-t-g-----c-ag--aa-g-a------------g-ga-g-ag-t----gg
--aatt-cca-c-gt--gt-a-gcg-gtgaaa-tg-cgt-agag-a-tg-t-gga--gg-
a-ac-a-cc-ag--t--g--gc-gaa-g--g-c---g----a--c-t-ctctg------g
-tc-tg------------------------------------------------------
--------ta-a-c-t--ga--cg-----ct-ga-gg--a-g-cga--aa-g-c------
--------g-t-gg-gag-c-g-aaca--gg-atta-g-ata-c-----cc-t-g-gtta
g-t----c-ca--c-g-ccg-t-aaa--c-gatg-ag--tg-ct---------a-ag--t
--g-t-ta-g-gg-g--g--t---------------------------------------
---------------------------------------------tt-cc----------
------------------------------------------------------------
------------------------------------------------------------
------------g---c-c-c--t--t-a-g-t-gc-t------gc--a----gc-taa-
-cg-c-a-t--t--aa-gc--a----c-tcc-gcc-t-g-gg-gag-ta---cgg-----
t-c--g-c-a-a-gac-t--gaa-actc-aaa---------ggaa-ttg-acggg-g-g-
cccg----c-a--c-a-a-gcg-gt-g--g--ag-ca-t--gt-ggt-tt-aatt-c-g-
aag-caac-g-cg-a-ag-a-a-cc-tt-a-cc-aggtc-tt-g-ac-a-t-c-------
-------ctc-t-g-------------a-ca-a-c-c--ct--a-ga-g-a-t--a-g-g
--g-c-t-t--t------ccc-------------------------------------t-
-tc-g------------------------------------------gg---------g-
--ac-aga-g-t--ga--------------------------------------------
-------c-a-g-g-t-ggtg-ca-tgg-tt--gtc-gtc-a-gc-tc---g-tg-tc-g
--tga-ga-tgt-t-gg-g-tt-aa-gt-cccgc-aa--------c-gag-cgc-a-acc
-c-t-tg--at--c-ttag--t-t-g-c-c---aG-C-G--C--G---------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------------TAAT----------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------------G----G----T
-G------------G----G---A-A--CT---------------C-A-A-A-G-GA-G-
--A-C-T-GCC--G-CA-----------------------------------G-A---GA
A----------------------------------T-G-C-G--G-A-GG-A--AGG-C-
-GGGG-A-TGAC-GTC--AAGT-C---ATC-A-T-G-C-C-C-CTT----AT-G--TC-C
-T-GG-GC-TA-CAC-ACGTA-C--TA--CAATG---G-GCTT-A-A-AC-AAA-GT-GA
------------------------------------------------------------
--------------------------------------A-G-C-A-A--G-ACCG-C--G
---------------------------------------A-GG-T-C-----------A-
-A-G-CC---A----------A--CCA-C------A-T-AAACA-AG-C-T-C-T-CAG-
TTC--------GGA-T-CGGAG-GC--T-GCAA-CT-C----------------------
------------------------------------------------------------
---------------G-CCTCC-G-T-G-AA-G-TC-GGAAT-CG-C-TA--G-TA-AT-
C-G-C----AGG-TC-A-G-C-------AT--ACT-GC-G-GT-G-AAT-ACGT-T-CCC
GGGCCT-TGTA----CACACCG-CCC-GTC-----A---CA--CCA-CG-AA-A--G---
TTG-A-CA-AC-ACC--C-GAA------G--C-CGG-TG-G-C-T-T-AA-C-C-G----
-------------------------------------------------------C-CA-
------------------------------------------------------------
----------------------------------------A--GG-A--GA-G--A---G
C-CGT--CT--AAG-G----T-GGG-GT-CGA------------------------TG--
ATT-GGGG-TG-AAG-TCGTAACAA-GGTAG-CCGT-ATCGGAA-GGTG-CG........
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>chmraD12_7000004131500344_1-4694:4695-7682_S000127669
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.........gctc-ag-at-tgaa-c-gc--tgg-c--g-gc-a-gg--c----c-t--a
acaca-t-gc-a-agt-cga-g-cg----------g-cagcacaagt-------------
------------------g-ag--------------------------------------
--------------tttact----------------------------------------
-----------------------------------------cat----------------
-----gaggt-g--gc--g--ag-c-gg-c-gg-a--c-------------ggg-tgagt
-a--at-gc-c-t-a-gg---g-a--t-ct-g--c-c-cag--tc-g-------------
-----------------------------------------------------t-gg---
-ggg-at-aa-cag-------------------------t-t-g----------------
-------gaa-a---cga-ctg-ctaa-ta---cc-g--c-at-a----------c----
----------------g-------------------------------------c--c--
------------------------------------------------------------
---------------------------------------------------------c-t
acg---------------------------------------------------------
------------------------------------------------------------
-----------------g-g-g--------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------gaaa--g-g-a-gg-----g--ga-c--c------------------------
------------------------------------------------------------
--------------------------------ttc-g-----------------------
------------------------------------------------------------
-----------------------------------g-g--cc-tt--c---c-g------
--------c----g-a---t-tg-g---at---g-a-----a-cct-agg--t-ggg--a
------tt--a--g-ct-a----g---ttgg-t-g-ag-g-t----aat-gg-c-t-c-a
cca--a-gg-c-g--a-cg-a------------tcc-c-t------ag-ct-g-t-tct-
g-ag----a--gg-at--g-at-c-ag-ccac-a-ctggg--a-c-tg-a-ga-c-ac-g
-g-cccaga-ctcc-tac-g--g-g-a-g-gc-a-gc-a-g-tg---gg-g-a-ata-tt
gca-c-aa-t-gg--gg-ga-a----a-c-cc-t-ga-tg-ca-gcca-tgcc-g-cg-t
---g-t-g--t--ga-a-g--a--a-g-g-cc-----tt-cg---------g-g-t-t-g
-t--a---aa-g-cac--------tt-tc-a-g--t-agg----ga-g--g---aa-agg
t---tgta-ag----t--t--aa-t---a----c-----ct-t-gca-gct-gt-ga-cg
-tt-a-c-ct-a-ca-g---------aa-----------gaagg-acc-gg-c-taa---
c--t-ccgt--gcca--g-c---a--gccg---c-gg--ta-at--ac---gg-ag-ggt
-cca-a-g-cg-ttaa-t-cgg-aa-tt-a--c-t--gggc-gta----aa-gcgt-gc-
-g-ca-g-g-c-g------------g--t-tt-g-t-t-aa----g-c-g-a---g-atg
-tg-a-aa-gc--cc-cgg-g---------------------------------------
-----------------------------ct-c-aa------------------------
-------------------------------------------------cc-t-g-gg-a
a-t----t-g-c-a-t-t--------t--cg-a-a-c-t-g-gca--a-a-c--------
------------------------------------------------------------
------------------------------------------------------------
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-t-a-g-a-g-t-c-----t-tg--ta-g-a------------g-gg-g-gg-t----ag
--aatt-cca-g-gt--gt-a-gcg-gtgaaa-tg-cgt-agag-a-tc-t-gga--gg-
a-at-a-cc-gg--t--g--gc-gaa-g--g-c---g----g--c-c-ccctg------g
-ac-aa------------------------------------------------------
--------ag-a-c-t--ga--cg-----ct-ca-gg--c-a-cga--aa-g-c------
--------g-tggg-gag-c-a-aaca--gg-atta-g-ata-c-----cc-t-g-gta-
g-t----c-ca--c-g-ccg-t-aaa--c-gatg-tc--ta-ct---------c-gg--a
--g-t-tt-g-gt-g--t------------------------------------------
--------------------------------------------ctt-ga----------
------------------------------------------------------------
------------------------------------------------------------
----------------a-c-a-ct--g-g-g-c-tc-t------ca--a----gc-taa-
-cg-c-a-t--t--aa-gt--a----g-acc-gcc-t-g-gg-gag-ta---cgg-----
c-c--g-c-a-a-ggt-t--aaa-actc-aaa---------tgaa-ttg-acggg-g-g-
cccg----c-a--c-a-a-gcg-gt-g--g--ag-ca-t--gt-ggt-tt-aatt-c-g-
atg-caac-g-cg-a-ag-a-a-cc-tt-a-cc-tactc-tt-g-ac-a-t-c-------
-------cag-a-G-------------A-AC-T-T-A--CC--A-GA-G-A-T--G-G-T
--T-T-G-G--T-G-----C--------------------------------------T-
-TC-G------------------------------------------GG----A----A-
--CT-CTG---A--TA--------------------------------------------
-------C-A-G-G-T-GCTG-CA-TGG-CT--GTC-GTC-A-GC-TC---G-TG-TT-G
--TGA-GA-TGT-T-GG-G-TT-AA-GT-CCCGC-AA--------C-GAG-CGC-A-ACC
-C-C-TA--TC--C-TTAG--T-T-G-C-T---AG-C-A--G--G---------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------------TAA-----------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------------TG---C----T
-G------------A----G---A-A--CT---------------C-T-A-A-G-GA-G-
-AC-T-G-CCG--G-T------------------------------------G-A---TA
A----------------------------------A-C-C-G--G-A-GG-A--AGG-T-
-GGGG-A-CGAC-GTC--AAGT-C---ATC-A-T-G-G-C-C-CTT----AC-G--TG-T
-A-GG-GC-TA-CAC-ACGTG-C--TA--CAATG---G-CGCA-T-A--C-AGA-GT-GC
------------------------------------------------------------
--------------------------------------T-G-C-G-A--A-CCTG-C--G
---------------------------------------A-AG-G-T-----------A-
-A-G-CG---A----------A--TCA-C------T-T-AAAGT-GC-G-T-C-G-TAG-
TCC--------GGA-T-TGGAG-TC--T-GCAA-CT-C----------------------
------------------------------------------------------------
---------------G-ACTCC-A-T-G-AA-G-TC-GGAAT-CG-C-TA--G-TA-AT-
C-G-C----GTA-TC-A-G--A------AT--GAC-GC-G-GT-G-AAT-ACGT-T-CCC
GGGCCT-TGTA----CACACCG-CCC-GTC-----A---CA--CCA-TG-GG-A--G---
TGG-G-TT-GC-TCC--A-GAA------G--T-AGA-TA-G-T-C-T-AA-C-C------
-----------------------------------------------------CT---C-
G-----------------------------------------------------------
-------------------------------------------GG-A--GG-A--C---G
T-TTA--CC--ACG-G----A-GT....................................
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>chmraD13_S000004801_1-4690:4691-7682_S000437365
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..................................a--c-------------ggg-tgagt
-a--ac-ac-g-t-a-ga---taa--t-ct-a--c-c-cct--gt-g-------------
-----------------------------------------------------t-tc---
-ggg-at-aa-cag-------------------------t-g-c----------------
-------gaa-a---gcg-ctg-ctaa-ta---cc-g--g-at-g----------c----
----------------g-g--c-c-a--g--g-----------------g----gg-c--
------------------------------------------------------------
---------------------------------------------------------g-g
t-g---------------------------------------------------------
------------------------------------------------------------
-----------------g-t-t----t---------------c--c-t-g-g-t------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------caaa--g-t-c-gg-----c---c-tc-tc-----------------------
------------------------------------------------------------
--------------------------------gca-------------------------
------------------------------------------------------------
----------------------------------ga-a--gc-tg--a---t-g------
--------c----a-c---g-gg-g---at---g-a-----g-tct-gcg--t-ccn--a
------tc--a--g-ct-a----g---ttgg-t-a-gg-g-t----aat-gg-c-c-t-a
cca--a-gg-c-a--a-cg-a------------cgg-g-t------ag-ct-g-g-tct-
g-ag----a--gg-at--g-at-c-ag-ccac-a-ctggc--a-c-tg-g-aa-c-ac-g
-n-gccaga-ctcc-tac-g--g-g-a-g-gc-a-gc-a-g-tg---ag-g-a-att-tt
gcg-c-aa-t-gg--cc-gc-a----a-g-gc-t-ga-cg-ca-gcaa-cgcc-g-cg-t
---g-g-g--t--ga-a-g--a--a-g-g-cc-----tt-cg---------g-g-t-c-g
-t--a---aa-g-ccc--------ng-tc-a-g--g-tgg----ga-a--g---aatgtc
c---cggg-ga----a--t--aa-t---a----c-----gc-c-tcg-gga-gt-ga-cg
-gt-a-c-ca-c-ca-g---------ag-----------gaagc-acc-gg-c-taa---
c--t-ccgt--gcca--g-c---a--gccg---c-gg--ta-at--ac---gg-ag-ggt
-gcg-a-g-cg-ttat-t-cgg-aa-tt-a--c-t--gggc-gta----aa-gcgc-gt-
-g-ca-g-g-c-g------------g--g-cg-a-g-c-aa----g-t-c-t---g-atg
-tg-a-aa-gc--cc-cgg-g---------------------------------------
-----------------------------ct-c-aa------------------------
-------------------------------------------------cc-t-g-gg-a
a-g----t-g-c-a-t-t--------g--ga-a-a-c-t-g-ttc--g-t-c--------
------------------------------------------------------------
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-t-t-g-a-g-t-g-----c-tg--ga-g-a------------g-ga-a-gg-g----gg
--aatt-ccc-g-gt--gt-a-gag-gtgaaa-tt-cgt-agag-a-tc-g-gga--gg-
a-at-a-cc-ag--t--g--gc-gaa-g--g-c---g----c--c-c-ttctg------g
-ac-g-------------------------------------------------------
--------gcaa-c-t--ga--cg-----ct-ga-ga--c-g-cga--aa-g-c------
--------g-tggg-gag-c-a-aaca--gg-atta-g-ata-c-----cc-t-g-gta-
g-t----c-ca--c-g-ctg-t-aaa--c-gatg-at--ca-ct---------a-gg--t
--g-t-ag-c-gg-g---------------------------------------------
-------------------------------------------tact-catt--------
------------------------------------------------------------
------------------------------------------------------------
------------------c-c-tg--c-t-g-t-gc-c------gc--a----gc-taa-
-cg-c-g-t--t--aa-gt--g----a-tcc-gcc-t-g-gg-gac-ta---cgg-----
t-c--g-c-a-a-gac-t--aaa-actc-aaa---------ggaa-ttg-acggg-g-g-
cccg----c-a--c-a-a-gcg-gt-g--g--ag-ta-t--gt-ggt-tt-aatt-c-g-
acg-caac-g-cg-a-ag-a-a-cc-tt-a-cc-tgggc-tt-g-ac-a-t-c-------
-------ccC-G-G-------------A-AC-C-T-G--GT--G-GA-A-A-C--A-C-T
--G-G-G-G--T-GC----CC-C-----------------------------------T-
-TA-----------------------------------------TTGGG---GA----G-
--CC-GGG---A--GA--------------------------------------------
-------C-A-G-G-T-GCTG-CA-TGG-CT--GTC-GTC-A-GC-TC---G-TG-TC-G
--TGA-GA-TGT-T-GG-G-TT-AA-GT-CCCGC-AA--------C-GAG-CGC-A-ACC
-C-C-TG--CC--T-CTAG--T-T-G-C-C---AG-C-G--G------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------GTAAGG---------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------C----C
-G------------G----G---C-A--CT---------------C-T-A-G-A-GG-G-
-AC-T-G-CCG--G-T------------------------------------G-A---TA
A----------------------------------A-C-C-G--G-A-GG-A--AGG-T-
-GGGG-A-CGAC-GTC--AAGT-C---ATC-A-T-G-G-C-C-TTT----AT-G--CC-C
-A-GG-GC-TA-CAC-ACGTG-C--TA--CAATG---G-CCGG-T-A--C-AAA-GG-GA
------------------------------------------------------------
--------------------------------------T-G-C-G-A--A-CCTG-C--G
---------------------------------------A-GG-G-G-----------G-
-A-G-CA---A----------A--TCC-C------A-A-AAAGC-CG-G-T-C-C-CAG-
TTC--------GGA-T-CGGAG-TC--T-GCAA-CT-C----------------------
------------------------------------------------------------
---------------G-ACTCC-G-T-G-AA-G-GC-GGAAT-CG-C-TA--G-TA-AT-
C-G-C----GGA-TC-A-G-C-------AT--GCC-GC-G-GT-G-AAT-ACGT-T-CCC
GGGCCT-TGTA----CACACCG-CCC-GTC-----A---CA--CCA-CG-AA-A--G---
TCG-G-CT-GT-ACC--A-GAA------G--T-GCG-TG-G-G-C-C-AA-CC-------
-----------------------------------------------------GCGATTG
TG----------------------------------------------------------
-------------------------------------T-CG--TG-G--GG-C--A---G
C-GTA--CC--AAG-G----T-ATG-GT-CGA------------------------TG--
ATT-GGGG-TG-AAG-TCGTAACAA-GGTAG-CC..........................
............................................................
............................................................
............................................................
............................................................
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............................................................
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..
>chmraD9_S000437007_1-4525:4526-7682_S000437299
............................................................
................................................agagttt-ga--
t-cc-t-g-gctc-ag-aa-cgaa-c-gc--tgg-c--g-gc-a-ag--c----t-t--a
acaca-t-gc-a-agt-cga-a-cgg---------a-t---tg-t------------tc-
--------------tcg-t-ag--------------------------------------
--------------ctt-g-----------------------------------------
-----------------------------------------cta-tga-ga---------
-------ac--a--at--t--ag-t-gg-c-ag-a--c-------------ggg-tgagt
-a--at-gc-a-t-a-gg---a-a--t-ct-a--c-c-tag--ta-g-------------
-----------------------------------------------------t-at---
-agg-at-ag-cca-------------------------c-t-a----------------
-------gaa-g---tgg-tgg-gtaa-ta---ct-g--t-at-a----------a----
----------------t-------------------------------------cc-c--
------------------------------------------------------------
---------------------------------------------------------t-g
c-g---------------------------------------------------------
------------------------------------------------------------
-----------------g-g-g--------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------gaaa--g-a--------------------------------------------
------------------------------------------------------------
--------------------------------ttt-a-----------------------
------------------------------------------------------------
-----------------------------------------------t---c-g------
--------c----t-a-----catg---at---g-a-----g-cct-atg--t-tag--a
------tt--a--g-ct-a----g---ttgg-t-g-gg-g-t----aat-gg-c-c-t-a
cca--a-gg-c-a--g-tg-a------------tct-a-t------ag-ct-g-g-tct-
g-ag----a--gg-at--g-at-c-ag-ccac-a-ctgga--a-c-tg-a-ga-c-ac-g
-g-tccaga-ctcc-tac-g--g-g-a-g-gc-a-gc-a-g-tg---gg-g-a-ata-tt
gga-c-aa-t-gg--gc-gc-a----a-g-cc-t-ga-tc-ca-gcta-tgcc-g-cg-t
---g-a-g--t--ga-g-g--a--a-g-g-cc-----tt-ag---------g-g-t-t-g
-t--a---aa-a-ctc--------tt-tc-a-g--t-ggg----ga-a--g---a-----
------------------t--aa------------------------------t-ga-cg
-gt-a-c-cc-a-ca-g---------aa-----------gaagt-ccc-gg-c-aaa---
c--t-ccgt--gcca--g-c---a--gccg---c-gg--ta-at--ac---gg-ag-ggg
-gca-a-g-cg-ttgt-t-cgg-aa-tt-a--t-t--gggc-gta----aa-gggc-at-
-g-ta-g-g-t-g------------g--t-tt-g-g-t-ta----g-t-t-a---a-agg
-tg-a-aa-tg--cc-agg-g---------------------------------------
-----------------------------ct-t-aa------------------------
-------------------------------------------------cc-c-t-gg-a
g-c----t-g-c-t-t-t--------t--aa-t-a-c-t-g-cca--g-a-c--------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-t-g-g-a-g-t-c-----c-gg--ga-g-a------------g-ga-t-ag-c----gg
--aatt-cct-a-gt--gt-a-gag-gtgaaa-tt-cgt-agat-a-tt-a-gga--gg-
a-ac-a-cc-ag--t--g--gc-gaa-g--g-c---g----g--c-t-atctg------g
-tc-cg------------------------------------------------------
--------gt-a-c-t--ga--ca-----ct-ga-gg--t-g-cga--aa-g-c------
--------g-tggg-gag-c-a-aaca--gg-atta-g-ata-c-----cc-t-g-gta-
g-t----c-ca--c-g-ctg-t-aaa--c-gatg-ag--tg-ct---------g-ga--t
--g-t-gg-g-ggt----------------------------------------------
---------------------------------------------tt-tt----------
------------------------------------------------------------
------------------------------------------------------------
------------------a-c-ct--c-c-g-t-gt-t------gt--a----gc-taa-
-cg-c-g-t--t--aa-gc--a----c-tcc-gcc-t-g-gg-gac-ta---cgg-----
t-c--g-c-a-a-gac-t--aaa-ACTC-AAA---------GGAA-TTG-ACGGG-G-A-
CCCG----C-A--C-A-A-GC-GGT-G--G--AG-CA-T--GT-GGT-TT-AATT-C-G-
ATG-CAAC-G-CG-A-AA-A-A-CC-TT-A-CC-ACTTT-TT-G-AC-A-T-G-------
------AAGG-T-C-------------G-TA-T-CCC--TC--C-TA-A-T----A-GGG
-GG-A-G----T-C-----AG-------------------------------------T-
-TC-GG-----------------------------------------CT----G------
--GA-CCT-T-A--CA--------------------------------------------
-------C-A-G-G-T-GCTG-CA-TGG-CT--GTC-GTC-A-GC-TC---G-TG-TC-G
--TGA-GA-TGT-T-GG-G-TT-AA-GT-CCCGC-AA--------C-GAG-CGC-A-ACC
-C-T-CA--TC--C-TTAG--T-T-A-C-C---AA-C-A--G--G---------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------TAAT-----------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------------G---C----T
-G------------G----G---C-A--CT---------------C-T-A-A---GG-A-
AAC-T-G-CCA--G-T------------------------------------G-A---TA
A----------------------------------A-C-T-G--G-A-GG-A--AGG-T-
-GGGG-A-TGAT-GTC--AAGT-C---AGC-A-C-G-G-C-C-CTT----AT-A--AG-G
-T-GG-GC-TA-CAC-ACGTG-C--TA--CAATG---G-CAAC-T-A--C-AAT-AG-GT
------------------------------------------------------------
--------------------------------------C-G-C-G-A--G-ACCG-C--A
---------------------------------------A-GG-T-T-----------T-
-A-G-CT---A----------A--TCC-A------T---AAAAG-TT-G-T-C-T-CAG-
TTC--------GGA-T-TGTTC-TC--T-GCAA-CT-C----------------------
------------------------------------------------------------
---------------G-AGAGC-A-T-G-AA-GTC--GGAAT-CG-C-TA--G-TA-AT-
C-G-T----GGA-TC-A-T-C-------AT--GCC-AC-G-GT-G-AAT-ACGT-T-CTC
GGGTCT-TGTA----CACACTG-CCC-GTC-----A---CG--CCA-TG-GG-A--A---
TTG-G-CT-TA-ACT--C-GAA------G--C-TGG-TG-T-G-C-T-AA-C-C------
-------------------------------------------------------G-CA-
A-----------------------------------------------------------
-------------------------------------------GG-A--AG-C--A---G
C-CAT--TT--AAG-G----T-TGG-GT-TAG------------------------TG--
ACT-AGGG-TG.................................................
............................................................
............................................................
............................................................
............................................................
............................................................
............................................................
............................................................
............................................................
............................................................
............................................................
............................................................
............................................................
............................................................
............................................................
..
>chmraD17_S000414109_1-4650:4651-7682_S000253432
............................................................
................................................agagttt-ga--
t-cc-t-g-gctc-ag-ga-cgaa-c-gc--tgg-c--g-gc-g-tg--c----c-t--a
acaca-t-gc-a-agt-cgc-g-cgg---------g-g----------------------
--------------------g---------------------------------------
--------------gct-t-----------------------------------------
------------------------------------------c-----------------
--------------gg-cccccagc-gg-c-gg-a--c-------------ggg-tgagt
-a--gc-gc-g-t-a-gg---a-a--c-gt-g--t-c-cgg--ag-g-------------
-----------------------------------------------------t-gg---
-ggg-ac-aa-ccc-------------------------t-g-g----------------
-------gaa-a---ccg-ggg-ctaa-ta---cc-g--c-at-g----------g----
----------------g-------------------------------------gc-c--
------------------------------------------------------------
---------------------------------------------------------c-g
a-g---------------------------------------------------------
------------------------------------------------------------
-----------------g-g-c--------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------caaa--g-c-c------------------------------------------
------------------------------------------------------------
--------------------------------gcg-a-----------------------
------------------------------------------------------------
--------------------------------------------g--g---c-g------
--------c----t-t---c-cg-g---ag---c-g-----g-cct-gcg--t-ccg--a
------tt--a--g-ct-a----g---tcgg-c-g-gg-g-t----aac-gg-c-c-c-a
ccg--a-gg-c-g--a-cg-a------------tcg-g-t------ag-ct-g-g-tct-
g-ag----a--gg-ac--g-at-c-ag-ccac-a-ctggg--a-c-tg-a-ga-c-ac-g
-g-cccaga-ctcc-tac-g--g-g-a-g-gc-a-gc-a-g-tg---gg-g-a-ata-tt
ggg-c-aa-t-gg--gc-gc-a----a-g-cc-t-ga-cc-ca-gcaa-tgcc-g-cg-t
---g-g-g--t--ga-a-g--a--a-g-g-tc-----tt-cg---------g-a-t-t-g
-t--a---aa-g-ccc--------tt-tc-g-g--c-ggg----ga-c--g---a-----
------------------t--gg------------------------------t-ga-cg
-gt-a-c-cc-g-ca-g---------aa-----------gaagc-ccc-gg-c-taa---
c--t-tcgt--gcca--g-c---a--gccg---c-gg--ta-at--ac---ga-ag-ggg
-gct-a-g-cg-ttgt-t-cgg-aa-tt-a--c-t--gggc-gta----aa-gcgc-gc-
-g-ta-g-g-c-g------------g--c-gc-a-t-t-ta----g-t-c-a---g-gcg
-tg-a-aa-tc--cc-tgg-g---------------------------------------
-----------------------------ct-c-aa------------------------
-------------------------------------------------cc-c-g-gg-g
g-c----t-g-c-g-c-t--------t--ga-t-a-c-g-g-gtg--c-g-c--------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-t-g-g-a-g-g-a-----c-gg--ga-g-a------------g-gc-t-cg-c----gg
--aatt-ccc-a-gt--gt-a-gag-gtgaaa-tt-cgt-agat-a-tt-g-gga--ag-
a-ac-a-cc-gg--t--g--gc-gaa-g--g-c---g----g--c-g-agctg------g
-cc-cg------------------------------------------------------
--------tt-t-c-t--ga--cg-----ct-ga-gg--c-g-cga--aa-g-c------
--------g-tggg-gag-c-a-aaca--gg-atta-g-ata-c-----cc-t-g-gta-
g-t----c-ca--c-g-ccg-t-aaa--c-gatg-tg--cg-ct---------g-gg--t
--g-t-tg-g-gg-g--g------------------------------------------
--------------------------------------------cct-ag----------
------------------------------------------------------------
------------------------------------------------------------
----------------c-c-c-ct--c-a-g-t-gc-c------gc--a----gc-caa-
-cg-c-g-g--t--aa-gc--g----c-acc-gcc-t-g-gg-gag-ta---cgg-----
c-c--g-c-a-a-ggt-t--gaa-actc-aaa---------ggaa-ttg-acggg-g-g-
cccg----c-a--c-a-a-gcg-gt-g--g--ag-ca-t--gt-ggt-tt-aatt-c-g-
aag-caac-g-cg-c-ag-a-a-cc-tt-A-CC-AGCCC-TT-G-AC-A-T---------
---------G---G-----------CA--CG-C-TATCTCC--A-GA-G-A-T--G-G--
--A-GAG-T--T-C-----CT-------------------------------------T-
-TC-G------------------------------------------GG----G----A-
--CG-TGC---G--CA--------------------------------------------
-------C-A-G-G-T-GCTG-CA-TGG-CT--GTC-GTC-A-GC-TC---G-TG-TC-G
--TGA-GA-TGT-T-GG-G-TT-AA-GT-CCCGC-AA--------C-GAG-CGC-A-ACC
-C-T-CA--TT--T-TCAG--T-T-G-C-C---AG-C-A--C------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------------T-TC----------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------------G---G---GT
-G------------G----G---C-A--CT---------------C-T-G-G-A-GA-G-
-AC-T-G-CCG--G-T------------------------------------G-A---CA
A----------------------------------G-C-C-G--G-A-GG-A--AGG-T-
-GGGG-A-TGAC-GTC--AAGT-C---CTC-ACT---G---C-GTT----AC-G--GG-C
-T-GG-GC-TA-CAC-ACGTG-C--TA--CAATG---G-CATC-T-A--C-AAT-GG-GT
------------------------------------------------------------
--------------------------------------C-G-C-C-A--C-CTCG-C--G
---------------------------------------A-GA-G-G-----------G-
-C-G-CT---A----------A--TCT-C------C---AAAAG-AT-G-T-C-T-CAG-
TTC--------GGA-T-TGCAC-TC--T-GCAA-CT-C----------------------
------------------------------------------------------------
---------------G-GGTGC-A-T-G-AA-G-TC-GGAAT-CG-C-TA--G-TA-AT-
C-G-T----GGA-TC-A-G-C-------AT--NNN-NC-G-GT-G-AAT-ACGT-T-CCC
GGGNNN-NNNN----NNNNNCG-CCC-GTC-----A---CA--CCA-TG-GG-A--G---
TTG-G-TT-CT-ACC--C-GAA------G--A-CGG-TC-C-G-C-T-AA-C-C------
-------------------------------------------------------G-CA-
A-----------------------------------------------------------
-------------------------------------------GA-A--GG-C--A---G
C-CGG--CC--ACG-G----T-AGG-GT-CAG------------------------CG--
ACT-GGGG-TG.................................................
............................................................
............................................................
............................................................
............................................................
............................................................
............................................................
............................................................
............................................................
............................................................
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............................................................
..
>chmraD22_7000004131502379_1-4625:4626-7682_7000004128198963
............................................................
............................................................
.................aa-cgaa-c-gc--tgg-c--g-gc-g-cg--t----c-t--t
aagca-t-gc-a-agt-cga-a-cgg---------c-aa--ga-g---------------
---------------ag-a-ag--------------------------------------
--------------ctt-g-----------------------------------------
-----------------------------------------ct--tc-------------
-----tctc--c--ta--g--ag-t-gg-c-gg-a--c-------------tgg-tgagg
-a--ac-ac-g-t-g-gg---taa--t-ct-a--c-c-ctt--aa-g-------------
-----------------------------------------------------a-tg---
-ggg-at-ag-ct--------------------------gct-a----------------
-------gaa-a---tag-cag-gtaa-ta---cc-g--a-atag---------------
----------------t-c--t-c-a--a--t--------------ggtt----ca-t--
------------------------------------------------------------
---------------------------------------------------------a-a
g-a---------------------------------------------------------
------------------------------------------------------------
-----------------a---g----t---------------a--ttg---a-g------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------gaaa--g-g-aagc---------------------------------------
------------------------------------------------------------
--------------------------------tac-g-----------------------
------------------------------------------------------------
-----------------------------------------g-ct--t---c-g------
--------c----t-t---g-ag-g---a----t-g----ag-ctt-gcg--t-ccc--a
------tt--a--g-ct-a----g---ttgg-t-g-ag-g-t----aaa-gg-c-c-c-a
cca--a-gg-c-g--a-cg-a------------tgg-g-t------at-cc-g-g-cct-
g-ag----a--gg-gt--g-at-c-gg-acac-a-ttggg--a-c-tg-a-ga-t-ac-g
-g-cccaaa-ctcc-tac-g--g-g-a-g-gc-a-gc-a-g-ct---aa-g-a-ata-tt
ccg-c-aa-t-gg--ac-gg-a----a-g-tc-t-ga-cg-ga-gcga-cgcc-g-cg-t
---g-g-a--t--ga-a-g--a--a-g-g-ct-----ga-aa---------a-g-t-t-g
-t--a---aa-a-tcc--------tt-tt-g-t--t-gat----ga-a--g---aataag
g---gtga-ga----g--g--ga-a--------t-----gc-t-cat-ctg-at-ga-cg
-gt-a-a-tc-g-ac-g---------aa-----------taagc-ccc-gg-c-taa---
t--t-acgt--gcca--g-c---a--gccg---c-gg--ta-ac--ac---gt-aa-ggg
-gcg-a-g-cg-ttgt-t-cgg-aa-tt-a--t-t--gggc-gta----aa-gggc-at-
-g-ta-g-g-c-g------------g--t-ta-t-g-t-aa----g-c-c-t---g-gtg
-tg-a-aa-tc--ct-ggg-g---------------------------------------
-----------------------------ct-t-aa------------------------
-------------------------------------------------c--c-c-taga
a------tag-c-a-t-t--------g--gg-t-a-c-t-g-tat--a-a-c--------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-t-t-g-a-a-t-t-----a-cg--ga-a-g------------g-ga-a-ac-t----gg
--aatt-cca-a-gt--gt-a-ggg-gtggaa-tc-tgt-agat-a-tt-t-gga--ag-
a-ac-a-cc-gg--t--g--gc-gaa-g--g-c---g----g--g-t-ttctg------g
-cc-ga------------------------------------------------------
--------ta-a-t-t--ga--cg-----ct-ga-ga--t-g-cga--aa-g-t------
--------g-tggg-gat-c-g-aaca--gg-atta-g-ata-c-----cc-t-g-gta-
g-t----c-ca--c-a-ctg-t-aaa--c-gatg-ta--ca-ct---------a-gg--t
--g-t-tg-g-gg-c---------------------------------------------
---------------------------------------------aa-ga----------
------------------------------------------------------------
------------------------------------------------------------
------------------g-c-tt--c-a-g-t-gc-c------aa--a----gc-aaa-
-cg-c-g-a--t--aa-gt--g----t-acc-gcc-t-g-gg-gag-ta---tgc-----
c-c--g-c-a-a-ggg-t--gaa-actc-aaa---------ggaa-ttg-acggg-g-g-
cccg----c-a--c-a-a-gcg-gt-g--g--ag-ca-t--gt-ggt-tt-aatt-c-g-
atg-ATAC-G-CG-A-GG-A-A-CC-TT-A-CC-AGGGC-TT-G-AC-A-T-A-------
-----T-ATA-G-G-------------A--T-A-T-A--GT----TA-G-A-G--A-T-A
--A-T-T-A--T-T-----CC-------------------------------------C-
-CG-T-----------------------------------------TTGG---G----G-
--TC-TAT---A--TA--------------------------------------------
-------C-A-G-G-T-GCTG-CA-TGG-TT--GTC-GTC-A-GC-TC---G-TG-CT-G
--TGA-GG-TGT-T-GG-G-TT-AA-GT-CCCGC-AA--------C-GAG-CGC-A-ACC
-C-T-TG--TT--A-TCTG--T-T-A-C-C---AG-C-A---------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------------TGTA----------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------------A---T--GGT
-G------------G----G---G-A--CT---------------C-A-G-A-T-AA-G-
-AC-T-G-CCG--G-T------------------------------------G-A---TA
A----------------------------------G-T-C-G--G-A-GG-A--AGG-T-
-GAGG-A-TGAC-GTC--AAAT-C---ATC-A-T-G-G-C-C-CTT----AT-G--TC-C
-T-GG-GC-TA-CAC-ACGTG-C--TA--CAATG---G-CCTG-T-A--C-AAA-GC-GA
------------------------------------------------------------
--------------------------------------A-G-C-G-A--A-ACAG-T--G
---------------------------------------A-TG-T-G-----------A-
-A-G-CA---A----------A--ACG-C------A-T-AAAGC-AG-G-T-C-T-CAG-
TCC--------GGA-T-TGAAG-TC--T-GAAA-CT-C----------------------
------------------------------------------------------------
---------------G-ACTTC-A-T-G-AA-G-TT-GGAAT-CG-C-TA--G-TA-AT-
C-G-T----ATA-TC-A-G-A-------AT--GAT-AC-G-GT-G-AAT-ACGT-T-CTC
GGGCCT-TGTA----CACACCG-CCC-GTC-----A---CA--CCA-CC-CG-A--G---
TTG-A-GG-AT-ACC--C-GAA------G--C-TAT-TA-T-T-C-T-AA-C-C-C----
-------------------------------------------------------G-TA-
A-----------------------------------------------------------
----------------------------------------G--GG-A--GG-A--A---G
G-TAT--TT--AAG-G----T-ATG-TT-TAG------------------------TG--
AGG-GGGG-TG-AAG-TCGTAACAA-GGTAG-CCGT-ACTGGAA-AGTG-CGGC-TGGAT
CACCT.......................................................
............................................................
............................................................
............................................................
............................................................
............................................................
............................................................
............................................................
............................................................
............................................................
............................................................
............................................................
............................................................
............................................................
..
>chmraD8_S000004272_1-3794:3795-7682_S000503167
............................................................
...........................................attgaagagttt-ga--
t-ca-t-g-gctc-ag-at-tgaa-c-gc--tgg-c--g-gc-a-gg--c----c-t--a
acaca-t-gc-a-agt-cga-g-cg----------g-cag-cg-g---------------
------------gaaag-t-ag--------------------------------------
--------------ctt-g-----------------------------------------
-----------------------------------------cta-cttt-----------
----tg-cc--g--gc--g--ag-c-gg-c-gg-a--c-------------ggg-tgagt
-a--at-gc-c-t-g-gg-----g--atct-g--c-c-cag--tc-g-------------
-----------------------------------------------------a-gg---
-ggg-at-aa-cta-------------------------c-t-g----------------
-------gaa-a---cgg-tag-ctaa-ta---cc-g--c-at-a----------c----
----------------g-------------------------------------c--c--
------------------------------------------------------------
--------------------------------------------------------ct-a
c-g---------------------------------------------------------
------------------------------------------------------------
-----------------g-g-g--------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------gaaa--g-c-a-gg-----g--ga-c--c------------------------
------------------------------------------------------------
--------------------------------ttc-g-----------------------
------------------------------------------------------------
-----------------------------------g-g--cc-tt--g---c-g------
--------c----g-a---t-tg-g---at--ga-a-------ccc-agg--t-ggg--a
------tt--a--g-ct-a----g---ttgg-t-g-ag-g-t----aat-gg-c-t-c-a
cca--a-gg-c-g--a-cg-a------------tcc-c-t------ag-ct-g-g-tct-
g-ag----a--gg-at--g-at-c-ag-ccac-a-ctgga--a-c-tg-a-ga-c-ac-g
-g-tccaga-ctcc-tac-g--g-g-a-g-gc-a-gc-a-g-tg---gg-g-a-ata-tt
gca-c-aa-t-gg--gg-ga-a----a-c-cc-t-ga-tg-ca-gcca-tgcc-g-cg-t
---g-t-g--t--ga-a-g--a--a-g-g-cc-----tt-cg---------g-g-t-t-g
-t--a---aa-g-cac--------tt-tc-a-g--c-gag----ga-g--g---aa-agg
t---tggt-ag----c--t--aa-t---a----a-----ct-g-cca-gct-gt-ga-cg
-tt-a-c-tc-g-ca-g---------aa-----------gaagc-acc-gg-c-taa---
c--t-ccgt--gcca--g-c---a--gccg---c-gg--ta-at--ac---gg-ag-ggt
-gca-a-g-cg-ttaa-t-cgg-aa-tt-a--c-t--gggc-gta----aa-gcgc-ac-
-g-ca-g-g-c-g------------g--t-tg-g-a-t-aa----g-t-t-a---g-atg
-tg-a-aa-gc--cc-cgg-g---------------------------------------
-----------------------------ct-c-aa------------------------
-------------------------------------------------cc-t-g-gg-a
a-t----t-g-c-a-t-t--------t--aa-a-a-c-t-g-tcc--a-g-c--------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-t-a-g-a-g-t-c-----t-tg--ta-g-a------------g-gg-g-gg-t----ag
--aatt-cca-g-GT--GT-A-GCG-GTGAAA-TG-CGT-AGAG-A-TC---GGAA-GG-
A-AT-A-CC-AG--T--G--GC-GAA-G--G-C---G----G--C-C-CCCTG------G
-CC-AA------------------------------------------------------
--------AG-A-C-T--GA--CG-----CT-CA-GG--T-G-CGA--AA-G-C------
--------G-TGGG-GAG-C-A-AACA--GG-ATTA-G-ATA-C-----CC-T-G-G-TA
G-T----C-CA--C-G-CCG-T-AAA--C-GATG-TC--AA-CT---------T-GA--A
--G-T-CT-G-TG----C------------------------------------------
-------------------------------------------CATT--T----------
------------------------------------------------------------
------------------------------------------------------------
----------------G-AGC-GC--G-G-G-T-TT-C------GG--A----GC-TAA-
-CG-C-G-T--T--AA-GT--T----G-ACC-GCC-T-G-GG-GAG-TA---CGG-----
C-C--G-C-A-A-GGT-T--AAA-ACTC-AAA---------TGAA-TTG-ACGGG-G-G-
CCCG----C-A--C-A-A-GCG-GT-G--G--AG-CA-T--GT-GGT-TT-AATT-C-G-
ATG-CAAC-G-CG-A-AG-A-A-CC-TT-A-CC-TACCC-TT-G-AC-A-T---------
-------AGY-AAG-------------A-A--S-TYT--YC--A-GA-G-A-T--GRA-T
--T-S---G--T-G-----CC-------------------------------------T-
-TC-G------------------------------------------GG----A----R-
-CTT-RC----A--TA--------------------------------------------
-------C-A-G-G-T-GCTG-CA-TGG-CT--GTC-GTC-A-GC-TC---G-TG-TC-G
--TGA-GA-TGT-T-GG-G-TT-AA-GT-CCCGC-AA--------C-GAG-CGC-A-ACC
-C-T-TG--TC--C-TTTT--T-T-G-C-C---AG------C--G---------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------------GGT-----------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-----------------------------------------------RATG--------C
CG------------G----G---A-A--CT---------------C-A-A-A-G-GA-G-
-AC-T-G-CCG--G-T------------------------------------G-A---TA
A----------------------------------A-C-C-G--G-A-GG-A--AGG-T-
-GGGG-A-CGAC-GTC--AAGT-C---ATC-A-T-G-G-C-C-CTT----AC-G--GG-T
-A-GG-GC-TA-CAC-ACGTG-C--TA--CAATG---G-CGCG-T-A--C-AGA-GG-GC
------------------------------------------------------------
--------------------------------------A-G-CGA-A----CTTG-C--G
---------------------------------------A--GAG-T-----------R-
-A-G-CG---A----------A--TCC-C------A-A-AAAGC-GC-G-T-C-G-TAG-
TCC--------GGA-T-CGGAG-TC--T-GCAA-CT-C----------------------
------------------------------------------------------------
---------------G-ACTCC-G-T-G-AA-G-TC-GGAAT-CG-C-TA--G-TA-AT-
C-G-T----GGA-TC-A-G--A------AT--GCC-AC-G-GT-G-AAT-ACGT-T-CCC
GGGCCT-TGTA----CACACCG-CCC-GTC-----A---CA--CCA-TG-GG-A--G---
TGG-G-TT-GC-TCC--A-GAA------G--T-AGA-TA-G-C-T-T-AA-C-C------
-------------------------------------------------------T-TC-
G-----------------------------------------------------------
-------------------------------------------GG-A--GG-G--C---G
T-TTA--CC--ACG-G----A-GTG-AT-TCA------------------------TG--
ACT-GGGG-TG-AAG-TCGTAACAA-GGTA..............................
............................................................
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>chmraD11_S000436014_1-5755:5756-7682_7000004128189973
............................................................
......................................................ttga--
t-cc-t-g-gctc-ag-ga-cgaa-c-gc--tgg-c--g-gc-a-cg--c----t-t--a
acaca-t-gc-a-agt-cga-a-cga---------g-c---ga-a---------------
--------------aga-g-tg--------------------------------------
--------------ctt-g-----------------------------------------
-----------------------------------------cac-tct------------
-------ct--a--gc--t--ag-t-gg-c-gg-g--c-------------ggg-tgagt
-a--ac-ac-g-t-g-ag---caa--t-ct-g--c-c-ttt--cg-g-------------
-----------------------------------------------------a-ga---
-ggg-at-ac-caa-------------------------t-t-g----------------
-------gaa-a---cga-ttg-ttaa-ta---cc-t--c-at-a----------a----
----------------c-a--t-a-a--c--g-----------------aa---gc-c--
------------------------------------------------------------
---------------------------------------------------------g-c
a-t---------------------------------------------------------
------------------------------------------------------------
-----------------g-a-c--t-t---------------t--g-t-t-a-t------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------caaa--t-g--------------------------------------------
------------------------------------------------------------
--------------------------------aat-t-----------------------
------------------------------------------------------------
-----------------------------------------------t---c-g------
--------c----c-g---a-aa-g---at---g-a-----g-ctc-gcg--t-ctg--a
------tt--a--g-gt-a----g---ttgg-t-g-ag-g-t----aac-gg-c-c-c-a
cca--a-gc-c-g--a-cg-a------------tca-g-t------ag-cc-g-g-act-
g-ag----a--gg-tt--g-aa-c-gg-ccac-a-ttggg--a-c-tg-a-ga-c-ac-g
-g-cccaga-ctcc-tac-g--g-g-a-g-gc-a-gc-a-g-tg---gg-g-a-ata-tt
gca-c-aa-t-gg--gc-ga-a----a-g-cc-t-ga-tg-ca-gcga-tgcc-g-cg-t
---g-a-g--g--ga-a-g--a--a-g-g-tt-----tt-ag---------g-a-t-t-g
-t--a---aa-c-ctc--------tg-tc-t-t--t-ggg----ga-c--g---a-----
------------------t--aa------------------------------t-ga-cg
-gt-a-c-cc-a-ag-g---------ag-----------gaagc-tcc-gg-c-taa---
c--t-acgt--gcca--g-c---a--gccg---c-gg--ta-at--ac---gt-ag-gga
-gcg-a-g-cg-ttgt-c-cgg-aa-tt-a--c-t--gggt-gta----aa-ggga-gc-
-g-ta-g-g-c-g------------g--g-at-t-g-c-aa----g-t-c-a---g-gtg
-tg-a-aa-tt--ta-ggg-g---------------------------------------
-----------------------------ct-t-aa------------------------
-------------------------------------------------cc-c-c-tg-a
a-c----t-g-c-a-c-t--------t--ga-a-a-c-t-g-tag--t-t-c--------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-t-t-g-a-g-t-g-----a-ag--ta-g-a------------g-gt-a-ag-c----gg
--aatt-cct-a-gt--gt-a-gcg-gtgaaa-tg-cgt-agat-a-tt-a-gga--gg-
a-ac-a-tc-ag--t--g--gc-gaa-g--g-c---g----g--c-t-tactg------g
-gc-tt------------------------------------------------------
--------ta-a-c-t--ga--cg-----ct-ga-gg--c-t-cga--aa-g-c------
--------g-tggg-gag-c-a-aaca--gg-atta-g-ata-c-----cc-t-g-gta-
g-t----c-ca--c-g-ccg-t-aaa--c-gatg-at--ta-ct---------a-gg--t
--g-t-gg-g-gg-g---------------------------------------------
--------------------------------------------act-ga-cc-------
------------------------------------------------------------
------------------------------------------------------------
------------------c-c-tt--c-c-g-t-g-cc------gc--a----gt-taa-
-ca-c-a-a--t--aa-gt--a----a-tcc-acc-t-g-gg-gag-ta---cgg-----
c-c--g-c-a-a-ggc-t--gaa-actc-aaa---------ggaa-ttg-acggg-g-g-
cccg----c-a--c-a-a-gca-gt-g--g--ag-ta-t--gt-ggt-tt-aatt-c-g-
aag-caac-g-cg-a-ag-a-a-cc-tt-a-cc-aggtc-tt-g-ac-a-t-c-------
-------gta-c-g-------------c-at-a-g-c--at--a-ga-g-a-t--a-t-g
--t-g-a-aa-t--c----cc-------------------------------------t-
-tc-g------------------------------------------gg---g-----a-
--cg-tat---a--ga--------------------------------------------
-------c-a-g-g-t-ggtg-ca-tgg-tt--gtc-gtc-a-gc-tc---g-tg-tc-g
--tga-ga-tgt-t-gg-g-tt-aa-gt-cccgc-aa--------c-gag-cgc-a-acc
-c-t-ta--ct--g-ttag--t-t-g-c-t---a--c-----------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------------gcaa----------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-g------------a----g---c-a--ct---------------c-t-a-g-c-ag-g-
-ac-t-g-ccg--t-t------------------------------------g-A---CA
A----------------------------------A-A-C-G--G-A-GG-A--AGG-T-
-GGGG-A-TGAC-GTC--AAAT-C---ATC-A-T-G-C-C-C-CTT----AT-G--AC-C
-T-GG-GC-TA-CAC-ACGTA-C--TA--CAATG---G-CACT-A-AAAC-AGA-GG-GC
------------------------------------------------------------
--------------------------------------G-G-C-G-A--C-ACCG-C--G
---------------------------------------A-GG---T-----------G-
-AAG-CG---A----------A--TCC-C------G---AAAAA--GTG-T-C-T-CAG-
TTC--------AGA-T-TGCAG-GC--T-GCAA-CC-C----------------------
------------------------------------------------------------
---------------G-CCTGC-A-T-G-AA-G-TC-GGAAT-TG-C-TA--G-TA-AT-
C-G-C----GGA-TC-A-G--C------AT--GCC-GC-G-GT-G-AAT-ACGT-T-CCC
GGGCCT-TGTA----CACACCG-CCC-GTC-----A---CA--CCA-TG-GG-A--G---
TCG-G-TA-AC-ACC--C-GAA------G--C-CAG-TA-G-C-C-T-AA-C-C------
-------------------------------------------------------G--CA
A-----------------------------------------------------------
-------------------------------------------GG-G--GG-G--C---G
C-TGT--CG--AAG-G----T-GGG-AT-TGA------------------------TG--
ACT-GGGG-TG-AAG-TCGTAACAA-GGTAG-CCGT-ATCGGAA-GGTG-CGGC-TGGAT
CACCT.......................................................
............................................................
............................................................
............................................................
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>chmraD23_S000009720_1-5056:5057-7682_S000437236
............................................................
............................................................
..........ctc-ag-at-tgaa-c-gc--tgg-c--g-gc-a-gg--c----c-t--a
acaca-t-gc-a-agt-cga-g-cg----------g-aaa-cg-a---------------
------------------g-ttaactgac--cc---------------------------
--------------ttc-gggta-acgtt-------------------------------
-----------------------------------------aac----------------
-----g-gc--g--tc--g--ag-c-gg-c-gg-a--c-------------ggg-tgagt
-a--at-gc-c-t-g-gg---a-a--a-tt-g--c-c-ctg--at-g-------------
-----------------------------------------------------t-gg---
-ggg-at-aa-cca-------------------------t-t-g----------------
-------gaa-a---cga-tgg-ctaa-ta---cc-g--c-at-a----------a----
----------------t-------------------------------------gc-c--
------------------------------------------------------------
---------------------------------------------------------t-t
c-g---------------------------------------------------------
------------------------------------------------------------
-----------------g-g-c--------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------caaa--g-a-g-gg-----g--ga-c--c------------------------
------------------------------------------------------------
--------------------------------ttc-g-----------------------
------------------------------------------------------------
-----------------------------------g-g--cc-tc--t---c-g------
--------c----g-t---c-ag-g---at---a-t-----g-ccc-agg--t-ggg--a
------tt--a--g-ct-a----g---ttgg-t-g-ag-g-t----aat-gg-c-t-c-a
cca--a-gg-c-g--a-cg-a------------tcc-c-t------ag-ct-g-g-tct-
g-ag----a--gg-at--g-at-c-ag-ccac-a-ctgga--a-c-tg-a-ga-c-ac-g
-g-tccaga-ctcc-tac-g--g-g-a-g-gc-a-gc-a-g-tg---gg-g-a-ata-tt
gca-c-aa-t-gg--gc-gc-g----a-g-cc-t-ga-tg-ca-gcca-tgcc-g-cg-t
---g-t-g--t--ga-a-g--a--a-g-g-cc-----tt-cg---------g-g-t-t-g
-t--a---aa-g-cac--------tt-tc-a-g--c-agt----ga-g--g---aa-ggc
g---g-gtacg----t--t--aa-t---a----g-----cgtg-c-t-cnt-tt-ga-cg
-tt-a-g-ct-g-ca-g---------aa-----------gaagc-acc-gg-c-taa---
c--t-ccgt--gcca--g-c---a--gccg---c-gg--ta-at--ac---gg-ag-ggt
-gcg-a-g-cg-ttaa-t-cgg-aa-tt-a--c-t--gggc-gta----aa-gcgc-at-
-g-ca-g-g-t-g------------g--t-tc-g-t-t-aa----g-t-c-a---g-atg
-tg-a-aa-gc--cc-ggg-g---------------------------------------
-----------------------------ct-c-aa------------------------
-------------------------------------------------cc-t-c-gg-a
a-c----t-g-c-a-t-t--------t--ga-a-a-c-t-g-gcg--g-a-c--------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-t-a-g-a-g-t-a-----c-tg--ta-g-a------------g-gg-g-gg-t----ag
--aatt-tca-g-gt--gt-a-gcg-gtgaaa-tg-cgt-agag-a-tc-t-gaa--gg-
a-at-a-cc-gg--t--g--gc-gaa-g--g-c---g----g--c-c-ccctg------g
-ac-ag------------------------------------------------------
--------at-a-c-t--ga--ca-----ct-ca-ga--t-g-cga--aa-g-c------
--------g-tggg-gag-c-a-aaca--gg-atta-g-ata-c-----cc-t-g-gta-
g-t----c-ca--c-g-ccg-t-aaa--c-gatg-tc--ta-ct---------t-gg--a
--g-g-tt-g-tg-g--c------------------------------------------
--------------------------------------------ctt-ga----------
------------------------------------------------------------
------------------------------------------------------------
----------------g-c-c-gt--g-g-c-t-tt-c------gg--a----gc-taa-
-cg-c-g-t--t--aa-gt--a----g-acc-gcc-t-g-gg-gag-ta---cgg-----
t-c--g-c-a-a-gat-t--aaa-actc-aaa---------tgaa-ttg-acggg-g-g-
nccg----c-a--c-a-a-gcg-gt-g--g--ag-ca-t--gt-ggt-tt-aatt-c-g-
atg-caac-g-cg-a-ag-a-a-cc-tt-a-cc-tactc-tt-g-ac-a-t-c-------
-------cag-a-g-------------a-ag-c-c-a--gc--g-ga-g-a-c--g-c-a
--g-g-t-g--t-g-----cc-------------------------------------t-
-tc-g------------------------------------------gg----a----g-
--ct-ctg---a--ga--------------------------------------------
-------c-a-g-g-t-gctg-ca-tgg-ct--gtc-gtc-a-gc-tc---g-tg-tt-g
--tga-aa-tgt-t-gg-g-tt-aa-gt-cccgc-aa--------c-gag-cgc-a-acc
-c-t-ta--tc--c-TTAT--T-T-G-C-C---AG-C-G--G--G---------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------------TAA-----------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------------TG---C----C
-G------------G----G---A-A--CT---------------A-T-A-A-G-AA-A-
-AC-T-G-CCG--G-T------------------------------------G-A---TA
A----------------------------------G-C-C-G--G-A-GG-A--AGG-T-
-GGGG-A-CGAC-GTC--AAGT-C---CTC-A-T-G-G-C-C-CTT----AC-G--GG-T
-T-GG-GC-TA-CAC-GCGTG-C--TA--CAATG---G-TGTT-T-A--C-AGA-GG-GA
------------------------------------------------------------
--------------------------------------A-G-C-A-A--G-ACGG-C--G
---------------------------------------A-CG-T-G-----------G-
-A-G-CA---A----------A--TCC-C------T---AAAAG-AC-A-T-C-T-CAG-
TTC--------GGA-T-TGTTC-TC--T-GCAA-CT-C----------------------
------------------------------------------------------------
---------------G-AGAGC-A-T-G-AA-G-TT-GGAAT-CG-C-TA--G-TA-AT-
C-G-C----GGA-TC-A-G-C-------AT--GCC-GC-G-GT-G-AAT-ACGT-T-CTC
GGGCCT-TGTA----CACACTG-CCC-GTC-----A---CG--CCA-TG-GG-A--G---
TTA-G-TT-TT-ACC--T-GAA------G--G-TGG-TG-A-G-C-T-AA-C--------
-------------------------------------------------------G-CA-
A-----------------------------------------------------------
--------------------------------------------G-A--GG-C--A---G
C-CAA--CC--ACG-G----T-AAA-AT-TAG------------------------CG--
ACT-GGGG-TG-AAG-TCGTAA......................................
............................................................
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