1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
|
#!/usr/bin/perl
use strict;
use warnings;
my %genus_counter;
while (<>) {
if (/^>/) {
my $line = $_;
chomp $line;
my @x = split(/\t/, $line);
my $taxons = pop @x;
my @taxa = split(/;\s/, $taxons);
my $genus = pop @taxa;
my $phylum = $taxa[1];
#print "$phylum\t$genus\n";
$genus_counter{$phylum}->{$genus}++;
}
}
foreach my $phylum (keys %genus_counter) {
my $count = 0;
foreach my $genus (keys %{$genus_counter{$phylum}}) {
if ( (my $count = $genus_counter{$phylum}->{$genus}) > 1) {
print "$phylum\t$genus\t$count\n";
}
}
#print $phylum . "\t$count\n";
}
exit(0);
|
