File: minc2-testminctools.sh

package info (click to toggle)
minc-tools 2.3.00%2Bdfsg-15
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 8,716 kB
  • sloc: ansic: 65,674; perl: 7,423; yacc: 1,177; sh: 633; lex: 319; makefile: 224
file content (29 lines) | stat: -rwxr-xr-x 833 bytes parent folder | download | duplicates (6)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
#! /bin/sh
#
# Test minc tools on minc2 file.

set -e

../mincconvert ../volume_io/Testing/t3_grid_0.mnc t3_grid_0_2.mnc -2 -clobber && echo "Converted file to MINC2.0 format." || exit 1
 
../mincinfo -minc_version -image_info t3_grid_0_2.mnc

../mincmath -const 1 -mult t3_grid_0_2.mnc t32.mnc -clobber || exit 1

echo "Statistics on image"
../mincstats -mean -std t32.mnc || exit 1

echo "Adding const 2 to all three channels."
../mincmath -const 2 -add t32.mnc t32_added.mnc -clobber || exit 1

echo "Statistics on image with added constant"
../mincstats -mean -std t32_added.mnc || exit 1

echo "Resampling file with t1.xfm transform"
../mincresample -transform ../volume_io/Testing/t1.xfm -tfm_input_sampling t32_added.mnc t32_transformed.mnc -clobber || exit 1

echo "Transformed file"
../mincinfo t32_transformed.mnc

exit 0